Array 1 21589-20762 **** Predicted by CRISPRDetect 2.4 *** >NZ_POPQ01000015.1 Streptococcus suis strain 192 SS_0192_Contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21588 36 100.0 30 .................................... AATTTTTGGCTGATGATGTTGCTTGAGAAA 21522 36 100.0 30 .................................... TAGAAATGGAAAATTCGCAAAAGAAATATA 21456 36 100.0 30 .................................... AAAAGCTTATTCAGCATATCGTGTCAAAGG 21390 36 100.0 30 .................................... CTATGGTTTTCTTTTCGTCTATCATCGTAT 21324 36 100.0 29 .................................... ATATTCAATTTACTAAATTCAAAAATCCA 21259 36 100.0 30 .................................... AATTATTGTGTATCATTCAAATCAAGCACA 21193 36 100.0 30 .................................... GAATTGCTAAAGAACAGCTAGACGTGCTAT 21127 36 100.0 30 .................................... TACTTTTTGGGGACATCAGCAAAACACATA 21061 36 100.0 30 .................................... TCTTTTAATTGTTTCAAACAGTCACCCCCT 20995 36 100.0 30 .................................... CGAAAACGTCGTTCCACATCCAGCTGTCTA 20929 36 100.0 30 .................................... AATAAAGCGAAACAAAAAACGAAGATAAAA 20863 36 100.0 30 .................................... CTTCTGGTAGTTATCCCCATAACATTTGTA 20797 35 83.3 0 .......................T..T.-....TCA | T [20773] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //