Array 1 180136-177442 **** Predicted by CRISPRDetect 2.4 *** >NC_013894.1 Thermocrinis albus DSM 14484, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 180135 29 100.0 36 ............................. ATGTTGGTATTTCTCATCTGTTTTGAAAAAGATATC 180070 29 100.0 37 ............................. CATTATCTTTCTTATGACAAGCAGTTCTTTTACCTCG 180004 29 100.0 39 ............................. TCTATGTATGCCCTTGCTCTGTCTTTTGCAGAAAAGATG 179936 29 100.0 38 ............................. CCCATCATGCCACCACCCATTCCTCCAATTAACATACC 179869 29 100.0 37 ............................. CAAGCTTGCTCTCAAAAAGCTAAAGAAGTTAATACTT 179803 29 100.0 36 ............................. CTATTTAAGAACATTACCATTCAAGGACTGGCTAAA 179738 29 100.0 37 ............................. GAGTTTTTTGCCGTCGGAGTCTTCTGGCACATATTCA 179672 29 100.0 37 ............................. GAAATTCCTCAGGAGGTGAAAAGCCTCTATGAGGAAT 179606 29 100.0 42 ............................. GAAAATAAGGAAGCATGTAATCAGCAAGAACTATGTAGATGT 179535 29 100.0 38 ............................. GTAAATGTAATGATAACTGAGCGAAAGACCTGACGTTT 179468 29 100.0 39 ............................. GTTATTGATTGTAAAAATCATATAACCATTATGGAAGCA 179400 29 100.0 37 ............................. TGTCAAATCTTATCAAGAAAGCATTGACAAGATTACA 179334 29 100.0 38 ............................. CTCCTCAAGGCGGGCAAGGAGTTGGAACACTATCAAGA 179267 29 100.0 37 ............................. TCTCAGTTGTCTGGGGTCAAACTCCTCCCTGACCACT 179201 29 100.0 37 ............................. TCTCAGTTGTCTGGGGTCAAACTCCTCCCTGACCACT 179135 29 100.0 40 ............................. ACAGTATTTAGCCATGAGGTCGTGGGAGTTTGAACCTGTC 179066 29 100.0 38 ............................. AAAGCATCCAGAGCCTCATCGGGGCTATCTATCTTCAC 178999 29 100.0 37 ............................. TCATTATTCTTTTCAAGAACTCTCACCGTGATCATGG 178933 29 100.0 38 ............................. TGCAAACACACTGTCATAACAGCAGTACATGTATTTCT 178866 29 100.0 42 ............................. CATAGGCTTGACATAGAAGGCATGAGGGATGTCCCTAAAAGG 178795 29 100.0 37 ............................. TTTTATCCTTGACCGAATTTAATAGCATTAAGCCCTT 178729 29 100.0 33 ............................. GCACGCACGCACGCACGCAACAAAAACGTCCCT 178667 29 100.0 38 ............................. TCTCATTGGGGTAAGGAACTACGGGTAGCGGTGTACGG 178600 29 100.0 37 ............................. AAGGTGATTCCAACGCAGATAGTGAAGATTGTGGACA 178534 29 100.0 37 ............................. GATGCTCAAGGAAATATGCGACAGGCTCATAGTTAAA 178468 29 100.0 37 ............................. CAAACTACCCAACCCGCCGAAGCTCCTAAACTGCCCC 178402 29 100.0 39 ............................. AGCTTTAGTGCCTTACGGATTTCATCCTTGTCTAGTATT 178334 29 100.0 39 ............................. ATGGGAGTAGTTTTGACACGGGGACTTCCTTCACTGGGT 178266 29 100.0 37 ............................. ATAGCAAACATCGTGCCAATCATCTGACTTTTAGGCT 178200 29 100.0 37 ............................. CAAACTACCCAACCCGCCGAAGCTCCTAAACTGCCCC 178134 29 100.0 37 ............................. CAGGAAGTGGCGGGAGCTTTGGAGAACGTGTTTTCTT 178068 29 100.0 38 ............................. TGAGGGGATAAATTACATAGATAAGTCTCTCACGCATG 178001 29 100.0 42 ............................. CTTCAGATCCATTAACTTCTCATACGCTTCATAGCTGTGGAG 177930 29 100.0 37 ............................. ATGCTCTGACAGATGAAGTATCCGCTTTACGGGGAGA 177864 29 100.0 37 ............................. GTAACGTTCAGCCCAGAATTTACTAAGACCTCTCTGT 177798 29 100.0 36 ............................. TTATGATTTGAGCAACGAAAAAGTTTTTATAGTCAG 177733 29 100.0 36 ............................. GGGAGACAACAGGGAACGAGTTTTCATCATCTTCTA 177668 29 100.0 37 ............................. ATGCTCTGACAGATGAAGTATCCGCTTTACGGGGAGA 177602 29 100.0 37 ............................. GTAACGTTCAGCCCAGAATTTACTAAGACCTCTCTGT 177536 29 100.0 37 ............................. TTTGAGTTTCAAAGAAAATCTGAACTTGCAAGAGCTA 177470 29 93.1 0 ........C...................A | ========== ====== ====== ====== ============================= ========================================== ================== 41 29 99.8 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Left flank : CACGAGCCACATTGGTGGCACCTACGTTTCCACTACCCACGCTTCTTATATCAACCCCCTTCCACTTAGCTATATGCTCTCCGAATAGGACGGAACCGTAAAGGTACGCCAACAGTACCAGCAGTATGGAGTCCATAGGTAGTATTATCTTATGGTTACTTTCCTAATGCAAGGGGTCAAGAAGAACCTTGTCATCTTCCTCCTTTTGGTATATAATATCCACCAAGACGGAGGGTCCACATAGGACCCTTGTTATCTTGGCAACTGAATAGAGGGTTGGTATTTCTTTGCAAGAGTGACTTTTAGGCATCTAGACATTTTTTAGTATTGATGTCTTGATGCAGAAATTTCTAATGCTTGAGAGAGTAAGCTCAGAGAGGGGTACTTTTGGATGCTATCCGAGACACCTGGAGTTTCCGAAAATAAACTTCATTTTGCGAAGGGTACCCCCTCTCTAAAGTTATTGATTCTGTAGGATAAGATTAATATGAAGAGTTAGG # Right flank : GTTTTTAATATCTCTATCTGTATGGTCTGTTTGCCTATTATCCTCTGGGGCCTCTCTATCTCTGCCTTGTAATGATTATCGTCAGATCCTCCATTAAGAAGCTCCCTCTTGCCAGACTCAAGAAATCTGTATGATCTTTATTGAAATTGAATATCAAAAATAAAAGGGCAGGACTATGTTCCTGCCCTTCTATTTTTATAGATTCTGTCTCTATGGCCAATACCTCACTATGGCAAAATCACCGTCTGAAGTTCCTGCGACCACAATCTTACCGTCTCTCTGGATGGCAAGGGCATAGGCTTTATCCTCACTATTCGTTCCAATATCTGTCGTTACTATGCCGTTTGTGCCGAAGCTGGTATCAAGGCTTCCATCTGGATTATACCTCACTACGGCAAAATCAGTGTTTGTGCCATTATAGGAATATCCTACGACCACAATCTTCCCGTCTGACTGGATGGCAAGGGCTTTGGCTTCATCCTCCCTATTCGTTCCAATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 246542-250335 **** Predicted by CRISPRDetect 2.4 *** >NC_013894.1 Thermocrinis albus DSM 14484, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 246542 29 100.0 37 ............................. TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG 246608 29 100.0 38 ............................. AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT 246675 29 100.0 38 ............................. GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT 246742 29 100.0 40 ............................. TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC 246811 29 100.0 37 ............................. CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT 246877 29 100.0 36 ............................. TGATCTTGGATACAATCATGAGAACGCTGTAATACT 246942 29 100.0 44 ............................. TCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATC 247015 29 100.0 36 ............................. AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC 247080 29 100.0 38 ............................. TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA 247147 29 100.0 39 ............................. CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC 247215 29 100.0 38 ............................. TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG 247282 29 100.0 37 ............................. AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA 247348 29 100.0 40 ............................. AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG 247417 29 100.0 40 ............................. GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG 247486 29 100.0 36 ............................. GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA 247551 29 100.0 38 ............................. CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC 247618 29 100.0 39 ............................. TCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTG 247686 29 100.0 45 ............................. GTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATG 247760 29 100.0 36 ............................. GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC 247825 29 100.0 37 ............................. TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT 247891 29 100.0 38 ............................. GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT 247958 29 100.0 37 ............................. TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA 248024 29 100.0 37 ............................. GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA 248090 29 100.0 37 ............................. GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA 248156 29 100.0 39 ............................. GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT 248224 29 100.0 37 ............................. GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA 248290 29 100.0 38 ............................. TACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATA 248357 29 100.0 46 ............................. CAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG 248432 29 100.0 38 ............................. AGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT 248499 29 100.0 37 ............................. TTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT 248565 29 100.0 36 ............................. CATTAACAGAACCAACGAGATAACCCGCCAGACTCT 248630 29 100.0 37 ............................. GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA 248696 29 100.0 36 ............................. GATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA 248761 29 100.0 40 ............................. AAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG 248830 29 100.0 37 ............................. TTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT 248896 29 100.0 42 ............................. CTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT 248967 29 100.0 38 ............................. TTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT 249034 29 100.0 37 ............................. ATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT 249100 29 96.6 37 A............................ CAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT 249166 29 100.0 40 ............................. CTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT 249235 29 100.0 39 ............................. AGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG 249303 29 100.0 43 ............................. GTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG 249375 29 100.0 36 ............................. GATATAGAGAAAGTATGATCTAAATCATAATCAACC 249440 29 100.0 39 ............................. ATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT 249508 29 100.0 39 ............................. GTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG 249576 29 100.0 36 ............................. TCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT 249641 29 100.0 39 ............................. GTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG 249709 29 100.0 39 ............................. TCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT 249777 29 100.0 37 ............................. AGCAACAAATCCGCACACCAGACCAAACACTACAAAT 249843 29 100.0 36 ............................. AGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC 249908 29 100.0 38 ............................. GATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC 249975 29 100.0 40 ............................. GATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA 250044 29 100.0 36 ............................. AAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT 250109 29 96.6 38 ...................A......... CAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA 250176 29 100.0 36 ............................. GTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA 250241 29 100.0 37 ............................. CACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG 250307 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ============================================== ================== 57 29 99.8 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Left flank : ACTGATAGGTAATGTGGTAGTTTTGAGGTTCCACCCACTTACCTTTTATGTGACGTTCAGCTTTCTCCTTTATCAACTCCACCTGCTCCTGAATCCTTTTAGTGGTGAAGGACCCAACAAAAACTCTTACCATAGACATGAGTATTATCTTACAGTTACTTTCCTAATGCAAGGGGTCAAGAAGAACCTTGTCATAATCCTCCTTTTGGTATATAATATCCACCAAGACGGAGGGTCCACATAGGACCCTTGTTATCTTGGCAACTGAATAGAGGGTTGGTATTTCTTTGCAAGAGTGACTTTTAGGCATCTAGACATTTTTTAGTATTGATGTCTTGATGCAGAAATTTCTAATGCTTGAGAGAGTAAGCTCAGAGAGGGGTACTTTTGGATGCTCTCCGAGACACCTGGAGTTTCCGAAAATAAACTTCATTTTGCGAAGGGTACCCCCTCTCTAAAGTTGTTGATTTTGTAGGATAAGATTAATATGATGAGTTGGG # Right flank : AGAGAAATAGAAAACGTGGAGGTTTAAGTCCCTCCATCTGCTTTTGTTGGTACATCACCAAACTTTCCTACCCTGCTAACCATAACACTACTTACAAACACAACACCTGAATGCTTATTAAGGAAAGGAGTAATACCTTCAAGCACAGCTTCAACAAGATTCTCTGGCATTACTGAAATGACCATTACAAGAGTGTCCTCTTCATTAAACAGAAGGTGGCCTTCGTGAAAACCGTGACTTCCTTTTCCAGACAGGTTATGTATTATGGTGTAGCCAGTGGCACCAGCTCTGTCCAATAGATCCAAAACAAAGTCTAAGTCCTCACCTCTAACGATTATTTCCACCTTCTTCATCTCATAGAGTTTTACACTTTTCATGCTTTCACCTCCTCTTTTTTGAAGTATTCAACCCAAACACCTTCTAAGTACCTATAAAAGATTTCCTTCTCCGGATCAAAGATAAGGAGATTTATCCAGCCGTTTTGCATAAGATCCCTTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 389627-392006 **** Predicted by CRISPRDetect 2.4 *** >NC_013894.1 Thermocrinis albus DSM 14484, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 389627 29 100.0 38 ............................. GGTATTTGCTGGCTGGTCTAAAAGCATGTTTAAAGTCT 389694 29 100.0 37 ............................. GGTTTTGACTTCATACACTAAGCGCTCGTGGTAATAT 389760 29 100.0 39 ............................. GTCATGCTTTGAAATTTTACTTCTTCCTGCTATAATTGT 389828 29 100.0 46 ............................. ATATACTGGTTTAACTCTACAGGTTTTACTGGGCGACCCTTGCTGT 389903 29 100.0 38 ............................. GTAAACATCTTCTACTATTATTTCCATTCCTGAAGCTA 389970 29 100.0 36 ............................. TGATATGGGTATATCCCCCCTATACTCAGGAAAATC 390035 29 100.0 37 ............................. GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC 390101 29 100.0 37 ............................. GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC 390167 29 100.0 35 ............................. GCACATGTGTATAGCCGATAGTGGCTTTCAAGCCC 390231 29 100.0 38 ............................. GAGGAGTGTCTCCTGGCTCTCGGAAGAGAACGGCTGGA 390298 29 100.0 39 ............................. AAAGAAGTTTGTAAGGAAGAGCTTTCACCTCTTCTTCGC 390366 29 100.0 38 ............................. CTATAGCGATTTATGTGCTCCTCTGTAAGTTCGTAGAG 390433 29 100.0 41 ............................. TCATCTATGAGATAGATGGCACTCTCATACACGGACATCTT 390503 29 100.0 37 ............................. TGAGGGCGAAGAAGCTCAATCCTGTATTTCCGTAAAA 390569 29 100.0 36 ............................. GACGGGCGTTCACTGAAAGAGTGTTCTTTTGTGGCT 390634 29 100.0 40 ............................. TGTTAGCTAAAATGCCTGACCTGTAAATTGCCCTAATTTG 390703 29 100.0 37 ............................. ACTATCTGCTGATAGAGGTAGCATCTAGGGCATACAG 390769 29 100.0 38 ............................. TTCATATAAGGATGTGTGCTTCTGTTTGTGATAGGGAC 390836 29 100.0 39 ............................. TTTTGTCCCAGTTGAGAAAAAAATTTTTTTTGTCGGAAA 390904 29 100.0 38 ............................. ATGTAGTTAACATGCTTGAGATACTCAAAAGCATAGGG 390971 29 100.0 37 ............................. TCTGCTTTCCATTTACGCCCTATATCGTAGTATTCAT 391037 29 100.0 37 ............................. AGACCATTCTTGAGAGAGCAGTAAAGGTAGAAATAGC 391103 29 100.0 39 ............................. ATGGACATCAGGAAAGGTGTCGGCTTTGCTAATGTATGG 391171 29 100.0 43 ............................. AATAGTGTGCTTAGGATCCTTGCGGTGGACTCGTGACCCACCG 391243 29 100.0 37 ............................. GCTATCTTTTCTATTGTTTCATCCTACCAGTAACGAG 391309 29 100.0 39 ............................. TCTGATACGAGCTGGTCAGCTATCTGATAAGCCATTCTG 391377 29 100.0 38 ............................. TTAGTCAATGAAATGATGACACGGTTGATGAAGTCCTC 391444 29 100.0 39 ............................. TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT 391512 29 100.0 38 ............................. TTCTCAGCCTGCATAAAGGCTTTGAGGAGAAGCCCGGG 391579 29 100.0 37 ............................. TTAGGATCTATGCTCATTATCCCAAGCCCCTTGTCAA 391645 29 100.0 37 ............................. TGTCTTTCAAAGCTTTCCTAAAATCACCACTCTCAAA 391711 29 100.0 39 ............................. TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT 391779 29 100.0 38 ............................. ATGGGGATAGTGCTGACGAGAGGTCTTCCTACGCTGGG 391846 29 100.0 36 ............................. TTCTGTATCTATTTTTTCGTCTGTCCAGTACTCCCG 391911 29 96.6 38 .........................G... CAGGCTTATGATAAATCGGTAAAAATCCTTTGCTCAAA 391978 29 89.7 0 ........C.....A...........G.. | ========== ====== ====== ====== ============================= ============================================== ================== 36 29 99.6 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Left flank : GTTTTAAAACAAAGATCTGAAAGGATCCTTCCTCCGCTTCTCTTATGGCTCTCTTTACGTACTCCTCCATAACAGGACTCACCACATCATCCCACTGTCCTATCAGCACTTTGCCCCAGCCCTGTACCAAAAGAACAAAAAGAATCAGTAGTATCCTCATAGGATATAGAATAAACCTATCTTGACAACAAAAAGGGTTTGGTTATATCATATAGCTGTAGGTAAGTAAGGAGGGTCCACATAGGACCCTTGTTATCTTGGCAACTGAATAGAGGGTTGGTATTTCTTTACAAGAGTGACTTTTAGGCATCTGGACATTTTTTAGTATTGATGTCTTGATGCAGAAATTTCTAATGCTTGAGAGAGTAAGCTCAGAGAGGGGTACTTTTGGGTGCTCTCCGAGACATCTGGAGTTTCCGAAAATAAACTTCATTTTGCGAAGGGTACCCCCTCTCTAAAGTTATTGATTCTGTAGGATAAGATTAATATGATGAGTTGGG # Right flank : GATTAGGTCTTTCTCCAAATCTCTGTACACTCCAAGGTGCATCTTAACCACTTTACCGTTTCTGTCTATAAGGTAAGAGGTGGGAAGACCCATTAAGCGCAGCTCCTTCTCTAAGTCTCCTGTAGGTCTCAATATGGTGAAAGATAGTTTGTTTTTTTCCAAGAACCTCTTCATGGATTCCTCTGAGTCATCCATGTTGACAGCTAAGATTTCAAAGCCTTTGTCTTTGTAGCGATTGTAAACTTGCTCAAATATAGGCATCTCTTCCCTGCAAGGCGGACACCAGCTGGCCCAAAAGTTGAGGAGTACCACCTTACCTCTATACTGAGAAAGTCTCACCTCTCTTCCGTCCAAAGTCCTAAATACCATATCCGGTAGTTGAATGTTCCCGGTCTGCACACTTACGCCCTGCTTATCTTCCTTTTCGTGTTGAAAGGCAAAGAAGAGGATCATACCTAACAGGATGGCTGCTAAAGCGATTGGTACAAGTTCTCTCCGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1500536-1496455 **** Predicted by CRISPRDetect 2.4 *** >NC_013894.1 Thermocrinis albus DSM 14484, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1500535 29 100.0 39 ............................. GCATCAATAGAACAGGTTATTAAAGAAGTACAGACTACA 1500467 29 100.0 39 ............................. AGCTCTATTGCAACCTGTACTATCTTGTACCTTGTATCC 1500399 29 100.0 38 ............................. TCATTGAAGACACGCGTATACAACGAAACAAAATCATT 1500332 29 100.0 38 ............................. CTTAAAGGTTCGGTCCGCGTAAGCGGACAAATTCGCAA 1500265 29 100.0 37 ............................. TGAGTCTCTGGAAACTGTGCGGTGGAAAAGATACATG 1500199 29 100.0 38 ............................. CTTCCTAACCTTTTTCGGTGCGGTGCGGTTTTTCCGTG 1500132 29 100.0 37 ............................. CAGAGGACACAGGTGGTGCTGATGCGGTGGAGAGAGT 1500066 29 100.0 38 ............................. TCCTGAAATTTTCTTTGATGCATTCCTCATCAGCTTCA 1499999 29 100.0 38 ............................. GATGCAACAAGTCTCACATCTTGTGTGACATCACTCTG 1499932 29 100.0 40 ............................. TCAGTATCGTCACCCTTCTTCCAGCAGATACTTCAACCAC 1499863 29 100.0 41 ............................. TTTGAAGTTTTTTAACTATTTTACGCTTCCTTCCTTTGCCC 1499793 29 100.0 42 ............................. AGTTTTCCGTTCGGGGCGGATGTACCAGCAAACACTGAGATT 1499722 29 100.0 37 ............................. GAACAACAGAAAAAAGTTGGAAAGGTACAGAATTCAG 1499656 29 100.0 35 ............................. CGCAACAACAGACAGAACCCGCCACCCCTACAACA 1499592 29 100.0 40 ............................. CTGACGTATCAGAGAAAGAGGAAGGACTGACAGGAACAGA 1499523 29 100.0 38 ............................. TTTTCTGCAGTATCCACGAAAACATTTAGCCCATCTTC 1499456 29 100.0 37 ............................. TTGTGAGAGTTCCTTCTTTCAGAGCCTTTCCAAGCAT 1499390 29 100.0 37 ............................. TGTTCTGTGGTGGCGGATTTTTCAGTTTCAATCCCTT 1499324 29 100.0 41 ............................. TTGAAAAGTCTTTACTTTCCACCTCTACATCCCTCACAGGA 1499254 29 100.0 39 ............................. CATACTTGTTATGCATCAAACCTTTCTGACCCTCCAAGG 1499186 29 100.0 37 ............................. CTAAGAGATATCCTGCATCTCTCTGTAAATACTTGAA 1499120 29 100.0 38 ............................. CTTCAGATGCACTCTAACTGGAGAGGTGTTCAGCGATA 1499053 29 100.0 39 ............................. TTTTATTGGATTTGGATTTTTTTAATTGCTACTTGATTT 1498985 29 100.0 40 ............................. TTTAAAAGTTTTTTTGTAATGAAAGCAGAACTACTTTTCA 1498916 29 100.0 38 ............................. CATGATACTGAGACAAATACAAGTAGTTTGTTGAAAAA 1498849 29 100.0 37 ............................. CTCTTAGCATCACTGTAAAGCTCGTAGAACTTGTTTT 1498783 29 100.0 40 ............................. GGCAGGCTAACGAGAGTATGCAAGCAAAGGGGCTACTCAA 1498714 29 100.0 36 ............................. TAAAAATGGAAGGTATAACTTCCTTCTCTTCCTTCA 1498649 29 100.0 37 ............................. TTGAACTTCTTCAAGAACCATTCTGATAGTGGAATTA 1498583 29 100.0 36 ............................. AGTGCCTTAGGAGTGGGGGTCAATCTTCCCTTTCAG 1498518 29 100.0 37 ............................. TTAAAATGAACTTCTTCATTTCTCTCACCTCCTGTCT 1498452 29 100.0 37 ............................. TCTTAAAAACTTCTTCTCAAGCCTTTCCGCACTACCC 1498386 29 100.0 42 ............................. TTCTCTACTAAACCACAAAAGCTGTTAGTGGTGTATAGGGAT 1498315 29 100.0 36 ............................. CATTGTGAAGATAGGGGAAACTCATGAGATAACAAG 1498250 29 100.0 37 ............................. TCCAGCATTGAGGAAGTGAGGCAAGAACTGAGGGGTC 1498184 29 100.0 35 ............................. CTGAGGATAGCAGTGCAAACTGGGGCGGTTTATGA 1498120 29 100.0 41 ............................. CGTTGGTGGAGATTGAATGAAGGGAGCCTCTTTTTCACTAT 1498050 29 100.0 37 ............................. CTATGCTGTTATCCTCATCCACGAGTGCTTCCTCAGC 1497984 29 100.0 39 ............................. TTTGGTTTTTTGCTTTTGTAAAAAGCGGGAAGGCGTTGC 1497916 29 100.0 41 ............................. AATATGGCAAGACCTATCAGGCAGGCATGCCACTCCTAAGT 1497846 29 100.0 39 ............................. GAAACTCTATGAAGCTTTTGGGATTAAGGTGTTTGGTGA 1497778 29 100.0 37 ............................. GATGCTGATCCTATCACATCTCCGTGGGGTGAGACAA 1497712 29 100.0 40 ............................. TTATGTCCACGCTACCAACTATTATCCCTTCTTCCTTTTT 1497643 29 100.0 39 ............................. CGCAGGAGATACAACACTTCTTCAAAGAGGATCTCGGAC 1497575 29 82.8 0 ....................GT..CT..T - Deletion [1497547] 1497546 20 69.0 38 ---------.................... CATGAGTTTTGGATCATTCTCCATTTCCGTAATTTTCT 1497488 29 100.0 37 ............................. TATGTTTGCATAGCTACTGGCGGGGCTTTGTATCTTT 1497422 29 100.0 39 ............................. TCCCCAACAATGTACTTAATACTCTGGCGGTGGACTCGT 1497354 29 100.0 36 ............................. TAGGTATTTTCCTACACATTATATATGCATACTGGC 1497289 29 100.0 38 ............................. GCTCCTCTTTTAATGACTTAGGCATGAAAAAGCTAATG 1497222 29 100.0 38 ............................. TTTGCTGTGCTTGAAAAGATAGCTGGGGAGATGGGATA 1497155 29 100.0 42 ............................. ACCCCCATCGGACCAAGCTCTTCCCTGATTAGCTCCTCAAGG 1497084 29 100.0 37 ............................. GTTGCTCATTGTACTGTAAAACAATCTGCATTATCTC 1497018 29 100.0 38 ............................. TTGCTTCCGCCATCACTTCCCAAAATGGGTAATGGCGG 1496951 29 100.0 38 ............................. TCTCTTGTACTATGCTACCAAGCTCCACCCTCGTTCCC 1496884 29 100.0 39 ............................. CTACGTCAAAAAAGCTATCAAGGAAACGCTTGATAAGTA 1496816 29 100.0 39 ............................. TGCAATCAATTGCTACAAAGAGACCTCTTTCTCTACCAC 1496748 29 100.0 37 ............................. AAAAAAGAAGGTGGTGTCAGCCCTCAAGTCATTGATA 1496682 29 100.0 39 ............................. CTACGTCAAAAAAGCTATCAAGGAAACGCTTGATAAGTA 1496614 29 100.0 36 ............................. ATCTTTGTCTCATCCTTGCCAGTGCCTTGTCCAGCA 1496549 29 100.0 37 ............................. CGCTGTTTTGCATACTGTGTGAGAAGTTCAGGATAGT 1496483 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 62 29 99.2 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Left flank : AAAGTATCATCTATAACACTTGTTTCTTCGTACCTGACGAC # Right flank : GTTTTTAATATCTCTATGGCCTGTTTGCCTATTATCCTGTGGAGACTCTCTATCTCTAGATCCTCCATTAAGAAGCTCCCCTCTTGTCAGACTCAAGAAATCTGTCCCTCCATCTGCAGATATCTGCTACAGACCTCTTTTCCTTCAATCTTTATTGAATATCAAAAACAAAAGGGCAGGAAAATAGTTCTGCCCTTCTATTTATTCCTGACATTAACCCTTATAGATTCTGTCTCTAATAGCAATACCTCACTACGGCAAAATCACCGCTTGAAAATCCTGCGACCACAATCTTCCCGTCTGACTGGATGGCAAGGGCACGGGCTCCATCCTCACGACCTCCAATATCTGTTCTTACCTTGCCGTTTGTGCCGAAGGTGGTATCAAGGCTTCCAGATGGTGCTGTTACAACACCTCCACCTCCTCCACCTCCTCCTCCACTACCTCCACCACCACCGCCGCCATAGTAGCCACTACCACCGCCTCCACCACAACCACTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //