Array 1 110354-112836 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOR01000042.1 Listeria monocytogenes strain NRRL B-33574 PROKKA_contig000042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 110354 36 100.0 30 .................................... TCAATTCTTAGAGCCTAGAAACCACGCAGA 110420 36 100.0 30 .................................... ATTACCTTTTCTAAACTATGCACACTCCCG 110486 36 100.0 30 .................................... ACGAGTATAGTCATTTACGAAAAGTAAGAA 110552 36 100.0 31 .................................... TAGGAGCTCGACCAACATGTTCAATCATTCA 110619 36 100.0 30 .................................... TCATATCTGGTTGGAAGGTGGTCGTGGTAG 110685 36 100.0 30 .................................... TTGGTGTTACAGACTTTACCATTCATTCGT 110751 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 110817 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 110883 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 110949 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 111015 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 111081 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 111147 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 111213 36 100.0 30 .................................... CTAAACCAACGATTAAAATATTCCCTATCA 111279 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 111345 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 111411 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 111477 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 111543 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 111609 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 111675 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 111741 36 100.0 30 .................................... AATTGACTTAATACTTGTGACGAATTCACC 111807 36 100.0 30 .................................... GAAGTTAGCGAGAAAGTAGACATGGAAGGC 111873 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 111939 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 112005 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 112071 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 112137 36 100.0 30 .................................... TTCCATCCCTTTACCGATAGCAGTAACGAC 112203 36 100.0 30 .................................... TCAGCGGTTGCGGATTTTGCTGTTCAACTG 112269 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 112335 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 112402 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 112468 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 112534 36 100.0 30 .................................... CTGTTACATTCACGTATTGCCTATGCCGTT 112600 36 100.0 30 .................................... TATTTACCAAGCTACAAATTGGGTGTATAC 112666 36 100.0 30 .................................... TGCTACTCGACCTCTTCTTGTTTCACTTTC 112732 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 112798 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [112823,112829,112832] ========== ====== ====== ====== ==================================== =============================== ================== 38 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACTGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //