Array 1 2411-1773 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRO01000050.1 Lactobacillus crispatus strain UMNLC25 SNF2W1B4M4S34155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2410 29 100.0 32 ............................. GTCAATGCAATTACTTATAAAGAAGTATTTCC 2349 29 96.6 32 ............................C GACCGACATTTCTTTTTTAACGCCTTCAAGTG 2288 29 96.6 32 ............................C TCCTCGTTAGCTCTTTGATCCTTTCGGGATCA 2227 29 100.0 32 ............................. CATTCAAAAATTTATGATGAAGCTAAATTCAA 2166 29 96.6 32 ............................C CAAAACGTCCAAACCAACTTGCAAATGTTTAG 2105 29 96.6 32 ............................C CAAGCTGAACATTTTGTTGATTATAAGTGTCA 2044 29 100.0 32 ............................. AAAAGTGGGCGATTGGCTTACTCGCTATTGAG 1983 29 100.0 32 ............................. CAATCACTGGTGAAACTTATGTCACTGATCAA 1922 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 1861 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 1800 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : ACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1054-843 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRO01000052.1 Lactobacillus crispatus strain UMNLC25 SNF2W1B4M4S3416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1053 29 96.6 32 ............................C TATTCATTTAAAGCAAGGTGCTAACTTATTGC 992 29 100.0 32 ............................. ACTCAAAAAGATGTTATATACACAATGGAATA 931 29 100.0 32 ............................. GGTAGGGGTGGTCATATACTTTATGTGTGAGT 870 28 82.8 0 ....................T..-..TGC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTGGAGGTGATCCTAATATCCGCCTATTCCAAACTGCCAAACATAC # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGAAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGTACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGTGCAAAGAAAACACGGAAAAGATTAATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTGCTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20157-22445 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRO01000056.1 Lactobacillus crispatus strain UMNLC25 SNF2W1B4M4S34166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20157 29 100.0 32 ............................. ACTTTGTAAATTAATATCTCTATTAAGTCTAG 20218 29 100.0 32 ............................. CCAATTTACGATTGGATCAATAAGAAATGGTA 20279 29 96.6 32 ............................C TATTTTAGGCGCTTATACAGCGCAAAATTATG 20340 29 100.0 32 ............................. ATTATAAGAAGTATTTTTATTAAAATCATCGG 20401 29 100.0 32 ............................. GTCAATGATTTTATTCTCAAAATCAATATCAG 20462 29 100.0 32 ............................. ATAATGGTTTACCAGATACTCTAAAAAGTTCT 20523 29 96.6 32 ............................C TAAGTTTGTCAAATTCACTATTTTTACCAATT 20584 29 96.6 32 ............................C AAAATATTTAGCAGCATGTCCAGAAAATGCTT 20645 29 100.0 32 ............................. AATTTCATTAGCAAGCGGTCTTCCGTTTCTAT 20706 29 100.0 32 ............................. ATTGTTGTGAGTTTGCATGCCATCTGGTACTA 20767 29 100.0 32 ............................. ATCCTTGTTATACTGTTCAATGTAAGTTAAAT 20828 29 100.0 32 ............................. ATATCTACTCGGCTGGAAACAATCCAAACCGG 20889 29 96.6 32 ............................C AATTCTTCCAGTAACCGGCGCAGCAACATAAG 20950 29 100.0 32 ............................. AACTCAATTAATAATGGTTTGTTAACTCCTTA 21011 29 100.0 32 ............................. ACCACTAAATGTTGGTTAGCAAGTGGTGTAAA 21072 29 100.0 32 ............................. CAGAAACAAGGTTCAATAGATGTATACACCTA 21133 29 100.0 32 ............................. GCCGTTCTTTATTGCAGTAAGGATTTAATTTG 21194 29 96.6 32 ............................C CAAATCGTTGACGGCAATTTAAGTGTGATTGG 21255 29 100.0 32 ............................. AAGTTAACTTAACATCACTATCAAAAACATCT 21316 29 100.0 32 ............................. GACGCCCAGTGGAGAGCCCTCAATTTTAGTCG 21377 29 100.0 32 ............................. ACTGCAATCTTGTTGTCTTGATCTTTGTTAGC 21438 29 100.0 33 ............................. GATGTAAGAGTTCTAGTGGCCTACATTGACGAA 21500 29 100.0 32 ............................. ACTCGGCTTATTAAAATCATTCAGATACGTCA 21561 29 100.0 32 ............................. GTGTAAGGAGGTTGTTTACTAATGACTTTGGC 21622 29 100.0 32 ............................. CACGGTTGAAATGGCTAAGCAACTAGCGATGA 21683 29 100.0 32 ............................. GTATGAAGTAGTGCCCTGCAGATATGTAATAG 21744 29 100.0 32 ............................. GAGTAAGGCAGAGAGAGCACAGTACTTAGCCC 21805 29 100.0 32 ............................. CAAATACGCTATTTTTAGAAAATGGTGTGACA 21866 29 96.6 32 ............................C ATGTGTGAGCCACCTTTGCAATAGAACTTACC 21927 29 100.0 33 ............................. AACCATTTTTGTTGTGAAGGGGAATCCCGAACA 21989 29 100.0 32 ............................. AAGTTAACTGGTGGTACTTCATATTTTTGGAA 22050 29 96.6 32 ............................C TAATCCACAGCCTGCTGGTGGTGGTCAAGATT 22111 29 100.0 32 ............................. CACTTGCTCTTAATGCCAGACAGATTCTCTAA 22172 29 96.6 32 ............................C ACCAATATTAGCTGTTTTACCGTTTAAACCAG 22233 29 96.6 32 ............................C TAGCAGCCGCAATCAACCAGCACTGTAGTAAA 22294 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 22355 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 22416 29 82.8 0 ...........AC....T......T.A.. | A [22437] ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATGTTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43921-44560 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRO01000056.1 Lactobacillus crispatus strain UMNLC25 SNF2W1B4M4S34166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43921 29 100.0 32 ............................. ACTTGATCGCAATTTATTTTTATATCCGTCTG 43982 29 100.0 32 ............................. AATTGCGTTTGGTTCCGCTCCGAACTTACCTT 44043 29 100.0 32 ............................. ATAACCACCTAAAGTACCAGTACCTTCAACAC 44104 29 100.0 32 ............................. AGATTAAATCCTTATCAGGTCGTTGTATTGGG 44165 29 100.0 32 ............................. TTCTTTCATTTAAATACCTCCTGTTTTGCATA 44226 29 100.0 32 ............................. TTAATCCTGATTGGGTAGCGGATATTCATCCA 44287 29 100.0 32 ............................. ATCCTGCTTGCTTGGGCGCTTAATTCTCTTGA 44348 29 100.0 33 ............................. AATATCCGCCTATTCCAAACTGCCAAACATACA 44410 29 96.6 32 ............................C TATTCATTTAAAGCAAGGTGCTAACTTATTGC 44471 29 100.0 32 ............................. ACTCAAAAAGATGTTATATACACAATGGAATA 44532 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTGCGGATGTTTAGAAAAAGCGGTTAATTCATGAAGCAATTGAATAAAACCAGACAGTAGAATTCGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATATAACCCCCTAAGCTCAAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAAGTGTCCACATTCTTCGAAGATACTATTGAAAACTTAAGTAAAACTGCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATATTTAGGGAGACAAGAAAATTCTGTTGTTGTGTGACTAATGGGATTAAAATAGATACAATAGTAATGACAAAGTGATGAAATTTTGGGATCTATCGTTTTGTGATTGTTGTTATATCAGGATTTGTTTACT # Right flank : GGTAGGGGTGGTCATATACTTTATGTGTGAGTGTATTCTCCACGTATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //