Array 1 309414-312133 **** Predicted by CRISPRDetect 2.4 *** >NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 309414 30 100.0 36 .............................. TTTTACAAATACAGTATCCAGTACAGGTGCTACAAA 309480 30 100.0 36 .............................. TGACTAAAATTAAAGCAGTAGCAAGAAGAGCAGGTT 309546 30 100.0 37 .............................. CCTCCTTCTGATATATTCTTGTCTTGATTTCTTGAAA 309613 30 100.0 41 .............................. TTAGATCCAGTTATATTATTAAATCTTATTTTTATCCAAAA 309684 30 100.0 36 .............................. GGTGTAAAGATTTATAAAAAGCTTTCAGGTAGTAGA 309750 30 100.0 36 .............................. TTAGTCTTAACAACAATACCTTGACGCAAAATACAA 309816 30 100.0 38 .............................. CTGTCAACATAGCCATTATTGAAATACTTTGGCGGAAG 309884 30 100.0 35 .............................. CCGCTTGCGATAGCGTCTTCGACAGGACTTTCAAG 309949 30 100.0 36 .............................. TCATAACGAATAAATTCAACCTTCCCGCCCCTTTTG 310015 30 100.0 39 .............................. GCTAATACAAACGCCCAGGCAGGAAGACAAACGGCCCAG 310084 30 100.0 37 .............................. TCAGATGCAAAAGCTAAGGATTTAATATACGCTGCTA 310151 30 100.0 37 .............................. CTTCGTCCCTGGACATTGGAGCGGCCATGTTTTCGTC 310218 30 100.0 36 .............................. GCGTCCAAGATCGCCATAAGAATGTCCTTCTGGTGG 310284 30 100.0 37 .............................. TTAGTAACCTTAAACAATCTCATAGTATCATATCGAT 310351 30 100.0 38 .............................. CCTATGACAGTTAGCATATCCAGTACCTTGTCCGCTTC 310419 30 100.0 36 .............................. TTGTATCCGTATATCGCTCCGGCCAAGCCGCCGGTA 310485 30 100.0 37 .............................. TCAATACAGGTTAAGAAATGGAATATCTCACCTGTAT 310552 30 100.0 39 .............................. AATGTTCTAATTGTTTAATTTTGTCATTCATAACATTAA 310621 30 100.0 36 .............................. AGAAGAATGTCCTCCTGCTTAATTCCTCCGTCTCGC 310687 30 100.0 39 .............................. CCCTGACCCTTATCCTCCTTGGTGTCGCCCTGATCTTCC 310756 30 100.0 39 .............................. CATAATCTTCTAAACATTTAAAATTGTCTGATAATAGAT 310825 30 100.0 39 .............................. ATAACAAAATACTCCCAAGAATTCCCGCTTTCTGTATCC 310894 30 100.0 35 .............................. CTTTCTTTCTTTTTTGTGTTCAATGATCCATGTTG 310959 30 100.0 39 .............................. CATGTTGGCGACTTCTAAAAGCGCTCTATCGCTTGTATA 311028 30 100.0 36 .............................. AAACCTTCCTCTCCAGAATAAGGCAATGTGTACCAC 311094 30 100.0 41 .............................. ACATTTTTAATAGCTCTGAACCAACCTGGAATATGTTTTAT 311165 30 100.0 36 .............................. TTCGTACCAACCAGTCACCAACAGGTTCTGCCAAGA 311231 30 100.0 37 .............................. CATCTCCAGCTTGTCACCGTTCAATATAGCGACTTGA 311298 30 100.0 37 .............................. AATAATATGCATAATGGAAAGGCGATATAACAATAAG 311365 30 100.0 38 .............................. TTATATACTTGTCAGAAAAAATAATAAAATAATAAAAA 311433 30 100.0 35 .............................. TGATAATATAATTCCGTCTATATAAGAGCCGATAT 311498 30 100.0 37 .............................. TCTGTCAAAGTTATCTTTTTCATTCAAAACATCTCCG 311565 30 100.0 37 .............................. AATAATATGCATAATGGAAAGGCGATATAACAATAAG 311632 30 100.0 38 .............................. TTATATACTTGTCAGAAAAAATAATAAAATAATAAAAA 311700 30 100.0 37 .............................. ATGTCAGACCATTTTAATCCCAAGAGTTCACCCCGGC 311767 30 100.0 38 .............................. CGCCATTCTTCTATTGTAACCACCTCATTATAAATATT 311835 30 100.0 37 .............................. TATTCATTTACCTGAAATGTTTCAAAAGTTCTATGCC 311902 30 100.0 38 .............................. ATTAATTTTGCTACTTCTGCAACTGTATAAAGTATTTC 311970 30 96.7 37 .................G............ TACCTAAAGAACAAAGCAGAGATGGGCAAAGCAACAA 312037 30 100.0 37 .............................. TTAGTTCTCCAGTTATTTTGTTATAGTCCCAAATGAT 312104 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ========================================= ================== 41 30 99.8 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : TGTTATCGTTGCTTGTTACTGCTTGTGTTGATGTTGTTGTGTTATCAGATGTACTACTTGTCGTATCATCTGCAAAAGCCATAAATGGAATGACAACCAATGATAAAATCAACATCGCTGTAATTATTTTTTTAAACATAACATCCCTTCAAAAATATTTTTTTAAATTGTACCATAAAATTGTAAACAAACTGTGAACAATTTATAGCTAATTTGTGAACAAAATAAAAAAATACAAAATAGACATAAAAAGTTAAAATGCAAGGAGGAATTTGGAGAATTATGTAGAATATATTTATATAAAGCTGTTGTATTAAGTAATAATTTGTCGTCTACCTTAAATAGTGCAAAAAGAGCAGGACATCGACGACATTTTAGGGATTTCTTATTTAAGCTTTTATCAGGAGAGATTAGAGTTTGCAGCATTATCAAGTATGATAGCTTGACGTTGACCTGATTTTTTATAAAATAAGAGTGGCTTTATATAAGGAAGTGAATGA # Right flank : TAGTTAGGAAAAGTAAAATAAAAAATATGTCATTGCATATAATGAGGTGAGAAGTAGAATGAGTGAAATTATTTATTATGGTGCATATGGTTCAAATTTGCTGAGAGAAAGATTTCTTATATATATAATATAAAAGGCGGAGAATATAGAGGTAAAGAATATAGCGGATGTAGAGACAAAACAGAACCAATAGATATGGGTTGGATATATGCTCCTTACAGACTTTATTTTGCAAAATGTTCTCCACTATGGGAAAATAAAGGTGTAGCTTTCCTATCTGGTAAGAAAGAAAAAAATCACGAGTACTATTCAGTTATTAGACTATGGAAGATAACTGAAGAACAATTTTATGAAATCCAAAAACAAGAAGGGAAATGTTGGTATAACCTTATTTTAGAACTTGGTGAAAAAGATGGAGTTAAAATTAAAACAATAACTGGATGTTGGATCGATGAAATACAAGCTCCATCAGAAGAATATTTAAAAGTTATTGAGAAAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 315799-316092 **** Predicted by CRISPRDetect 2.4 *** >NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 315799 30 100.0 36 .............................. AATGCAATTGATAATAAAGTAAACAATATGCAGATT 315865 30 100.0 35 .............................. TGTAAGTAAGTTGATGAAGAGCCAGTAACATCTGA 315930 30 100.0 37 .............................. TTTTGCATTTATATTTGCTCTCGATTTCTCTTATATA 315997 30 100.0 36 .............................. AATAAATGACTTAGAAAAGACATCTTATGCAAGCAC 316063 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CAGCATATAGAAAAAGACTGTCTTTATCATGAAATCAACAAATATAGCAAAAGCACAAAAATATTAGGCATTGGCAGAAAACCTAACATTGTGGAAAAAATACAGGAAAAAGTATTTGAAGTAGCACACAGCTTGTGTTGATGATGTGTTGTCAGATGTACTACTTATTGTATCATAAATTGTAAACAAGCTGTGAACAATTTATAGCCAATTCGTGAACAAAAATAAAAAATACAACATAGATAAGAAAAGTGAAATTGTATAAAGAGGAATTTGAAGAATTATGTAGAATATATTTATATAAAGTTGTTGTATTAAGTAATAATTTGTCGTCTACATTAGATAGTGCAAAAAGTGCTGGGCATCGACGACATTTTAGATATTTATCTTTTAAGCTTTTATTAGGAGAAAGGAGAGTTTGCGTCATTATCAAGGATGATAGCTTGACATTAACCTGATTTTTTGCAAAAAGAGAATGGCTTTGTAAAAGGAAGTGAAAG # Right flank : CCTAACTCTTTCATACTATTACCTCCCTCTATAATCTTTGATTTTCTTTTAATATCTCACTCATTCTCAAATTTTCATGATCTTCAAAGGAGCCCTCATGTATATTAATGCTATTTATTCATTAATTTTACATATGATAGGTATCCCAAATAAGCTTCTGTTGTTTTTCCATATTTTGGCCTATGAATTCCACTTAAGCTCATGTGGCATACCCTCCCATGTCTCACAGGATCTTTGTCCTTAATTCCTTCGTTCTGCCTTACATGAGGTGGATGTCAGTTATGCTCCCTTGCTGGGTCTTAAGCCCTTATGGTGAAATTACCAACCTGACAATTCCGGCTCTCTTTGTCAATCTTCGAATTTTTAAATTGAGTTTTAAATCTTTATTTGCTTTATTTTTAGCACCGCTTAATTATCCAAACCATCGCAGGAGCGAGGCTGTCAAGGGTCAGCTTTGTGAAGTGAAACGCAGCAAAGCTGAGACGTGGTCCTTGCCCTTG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 318047-319079 **** Predicted by CRISPRDetect 2.4 *** >NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 318047 30 100.0 36 .............................. TTTCAAATTCGACTTTTTGCACTTCTTATAACCTCT 318113 30 100.0 37 .............................. CGTCCCAAGCGTTGCAGATCCATACATAATACAGCGT 318180 30 100.0 40 .............................. CTTGGCATGTTCAAGGATAAAGTTGATGTAAACGTGGATG 318250 30 100.0 39 .............................. ATTGCTTCTATAAGTTTAAACTGGACCATCTCGGCTTTT 318319 30 100.0 37 .............................. TTTTTCTCCTGACTGATGCCATACTTCTTCCTAAATC 318386 30 100.0 37 .............................. CAATTATATGTTATGTTTAGTTACAAGTCAATTTTAA 318453 30 100.0 36 .............................. ATTCAAACAGTTAATTGAACTTATAGAAAAACTTTA 318519 30 100.0 36 .............................. CTTAGTACAATTGCCGACACACAAAACCTATATAAA 318585 30 100.0 36 .............................. ATAGATCACACGGCCCCAGGGGATATAAATGTGACA 318651 30 100.0 36 .............................. GTGTTTCGGCAGACATACCGTAAATGATACCAAATG 318717 30 100.0 36 .............................. AGTAGCCAATATGTGTGTATACCATTACCGCTATTA 318783 30 96.7 37 A............................. TTGGATTCCGCATATGGCCAACACATAGGAAACTCAA 318850 30 100.0 38 .............................. AAACTAACAGGCATAGAAGAATATTTAAAAAAGATACA 318918 30 100.0 35 .............................. TGTCAGCAGGTAATTTCCATTCTAGAATCCATCTG 318983 30 96.7 37 .............................T GCAAAATAGACGTATTTGCCGATACGTCTATTTTGTT 319050 30 83.3 0 .....................G...T.TTT | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 98.5 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : AGGGTCTTTCCTGTCATTTTTAGTTGGCGAGTTATCATCAAATTCCTTACTTCTCTTTACATGGAATGGATTTACCAGTACCACCTTATGGTTCTTATCTCTAAGAAACTGTGCAAAGCAGAGCCAATAATGGCCTGTTGGTTCCATGCCAACCATCAGATGCTCTTTGTTGCTTTTATTCATAATATCTGCAGCCCATTTTAAAAATCTTTTCATTCCATCAATGTCATTGCTAAATTCAATACGCTTACCGTATTCTATTCCTCTGAAATCGAAAGCTCTAGCGTGATGTATCTCTTTAGCAATGTCTACACCTACAATTAATGTCTTTTCTGTTATTTGCATTATTTTTGTATTTTGGTTATACTTCATATTAGGTACCTCCTTGTTATTTGAGAGTCGTGTTCATGAACAATCGACATCTTGTATTTTATCAGGAGGTACTTTTTATTTCAAATCTTATATTTCTTTATTACAGGAATGCTCCCTAAAATTTTTAA # Right flank : TGCATATAGTGAGGTGAGAAGAAAAATGAGTGAAATTATTTATTATGGTGCGTATGGGTCAAATTTGCTAAGAGAAAGGTTTCTTATATACATAAAAGGTGGAGAATATAGAGGCAAAGAATATAGAGGATGCAGAGATAAAACAGAACCAATAGATATGGGCTGGATATATGTTCCTTTACAGGCTTTATTTTGCAAGATGTTCTCCACGATGGGAAAATAAAGGTGTAGCTTTCTTATTTGACGAGAAAGAAGAAAATCCCGAGTACTATTCAGTCATTAGACTGTGGAAGATAACAGAAGAGCAGTTTTATGAAATCCAAAGACAAGAAGGCGGTTGGTATAACCTTATTTTAGAACTTGTTGAAAAAGATGGAATTGAAATTAAAACGATAACTGGACGCTGGAGAGATAAAAAACAAGCTCCATCAGAAGAATATTTAGAAGTCATTAAGAAAGGATTAAAAGAAACGACCAATTGGGATGATGAAAGAATAGAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2647417-2643256 **** Predicted by CRISPRDetect 2.4 *** >NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================================================================================================================================== ================== 2647416 30 100.0 36 .............................. TTTATTTAATTATATTTTAGCATTATTAGCAAATTT 2647350 30 100.0 36 .............................. ACAGTATGGAATGTCACTTCCAGCAGGCGCATACGT 2647284 30 100.0 35 .............................. CATTTTGGCACAGTGGTATTTAGAAACTGGAGGAA 2647219 30 100.0 37 .............................. ATTCATTTTACAGAAAAAATGCACTCTGAAAACTTAA 2647152 30 100.0 37 .............................. AAATTACATCAGCGTTAAATTTTATATAATATCCTGC 2647085 30 100.0 36 .............................. ATGCGAATGCCGTCTTGCCTGTGCCTGGTCTTGCGC 2647019 30 100.0 36 .............................. TTGCTATATGTGGCTTTGTAAATATCCCGCCTGTGG 2646953 30 100.0 36 .............................. TTTTACATGTGATGTAACCAACACACGCAGCGAAAC 2646887 30 100.0 37 .............................. TTTGCTTGGTATGCAGGTGCTGTGCTTGTCCCTGATA 2646820 30 100.0 37 .............................. TTAATATTTATTTTTGGTTTTGTGTTACCCGCCATAG 2646753 30 100.0 36 .............................. TAACATTAACGCCATGAAATCAGGGCAGCTGTCAGT 2646687 30 100.0 36 .............................. GAGATACAGCAAAGGAATTAGGAATTAAAGAAAGGC 2646621 30 100.0 37 .............................. CTTATTATGTCGCCTTGTATCCTTAATTCAATGTTTT 2646554 30 100.0 36 .............................. ATTATACCATCTGATAATCCAATAACATATAATTTT 2646488 30 100.0 37 .............................. CACCGATGCTTTGCTCTTCCCACTCTTTGCCTTTTAC 2646421 30 100.0 36 .............................. CGATATCGTCTGCATCCGGAACTCCAGTCCAGACAT 2646355 30 100.0 39 .............................. CCTGTATAAATGGTTTTACAATTTCTTCGGCTTTTTCTT 2646286 30 100.0 39 .............................. TTTATTGTATCAATTCCACAACAACATCTTGTGTCGCTC 2646217 30 100.0 36 .............................. ATTAAAGGTTGTAATCTTAATCCGACCCAAAAACCT 2646151 30 100.0 37 .............................. GTTCCAGTGATTAAAGGAATATTATATTTTTGCGATA 2646084 30 100.0 37 .............................. TTATCTGTTATATTTTTATAACTTAAAATCTGATTAT 2646017 30 100.0 37 .............................. GTTGTATCTGGGCAGGATGCTGTCAAAACTGCAAGGA 2645950 30 100.0 36 .............................. TTTAAAAAAATATATAAAGAATTGGTGGGATTAACT 2645884 30 100.0 38 .............................. TTCTATCCCTCCTAAAAAGAGAAAGCCCAGACAATTAA 2645816 30 100.0 37 .............................. ACATACGTCGAAGAGGGAATTGTCGAAACATACAAGA 2645749 30 100.0 39 .............................. TCCCATCTTCCCTCGTTCAGCCAGGTTTTTGGGTTTGGT 2645680 30 100.0 36 .............................. CCATATGTGCCAAGTATCGTTCTATCTGGATCCAAA 2645614 30 100.0 38 .............................. TTCCATTCCCTCATACTTTTTCACAAGTTCAATGTCTA 2645546 30 100.0 38 .............................. TTGGCGTGAAGCTGGCTGGCTTCCCCTCTATATCCCCC 2645478 30 100.0 38 .............................. CACAAAAACAAGCAAAAAGAATGTTTGCTCTTGCACAA 2645410 30 100.0 36 .............................. CTCTTACAAGCTTAACCGGTACACCTTCTTTTTTTA 2645344 30 100.0 38 .............................. CCCTAATCTTGTACCAGATCCAAACACTTTAGACCAAT 2645276 30 100.0 37 .............................. ATGATTTGTATAATATTCTTTGTAATACAATAGAGAG 2645209 30 100.0 38 .............................. ACGTACTTTTTTGCTTTATAATTAAAAATAAAATCAAA 2645141 30 100.0 37 .............................. TTTCATGTCCTGTTGAATGTACCATTTCGTGAAAAAG 2645074 30 100.0 37 .............................. ATTTTATTCGTCCAAGTGTATTTTAAAACTTTTTGAA 2645007 30 100.0 36 .............................. TACTTATTCCTCCTTGTATAATTAAAACCTTTCTTT 2644941 30 100.0 36 .............................. AGCAAAAAGGTGCACGTAAATTCATATTCAAATCCC 2644875 30 100.0 35 .............................. TTCATAACAATATTAATATTGGTGATAAATTTCCT 2644810 30 100.0 37 .............................. TAGAATTTATTAAATTTTTCTTTTATGTTTTCTTCTA 2644743 30 100.0 36 .............................. ATACTGCACCAAAAAATGATGGCTCGTTAGTAGGTT 2644677 30 100.0 37 .............................. TAAAATTACCTCCTAATAAATTCTCACTACTCTTTTA 2644610 30 100.0 36 .............................. AGCCAAAAATATTTTTTAAGAGACTTATGCATAACC 2644544 30 100.0 36 .............................. TTCTGCACCCCCAAGAAGTTTTCTTGTAGCAAATAT 2644478 30 100.0 35 .............................. AGGTAATCTTGTTTCTTATACTTCTACTGATTCCC 2644413 30 100.0 38 .............................. CCAGACTTTGAGCCTGTAGACAGTATTGACGATCCGTT 2644345 30 100.0 37 .............................. CTCCTAATTGTGATAATTGTTGCTGTGTTAGACCTTG 2644278 30 100.0 36 .............................. AAACATTGAAGGGCTGGAAAAAATCAGGGAGCAAAA 2644212 30 100.0 36 .............................. TGGGATATGATGAAGTTAAGAGTAGATATGCTAAAA 2644146 30 100.0 36 .............................. CCAATTTCCCTGCATTGTTTCTTTTGGTAGTATGAA 2644080 30 100.0 37 .............................. TAACTTGAATTTTTCCCTATTTTGTTATATACACTCA 2644013 30 100.0 36 .............................. CTTCCTTTATTGTGTGATCAGATAACTACGTCCTTG 2643947 30 100.0 36 .............................. CTAGTTTGGTTGATACTAATGTACAAACTTTGTCTG 2643881 30 100.0 38 .............................. AAACATATTTCGTCACCTACAATATCACTATCAATAAT 2643813 30 100.0 37 .............................. CTGTTTTTACTTGTACTCAGTTTTGGTATAGTATAAG 2643746 30 100.0 35 .............................. TCCATACAGAATGTTTACATTTGTAGGCAAAGTAA 2643681 30 100.0 37 .............................. CGATAAAATGTTACCTTTGGATACCTCTTCTTAACCT 2643614 30 100.0 37 .............................. AAATTAATAGGTTCAGATGCACATGATTTTTATAAAG 2643547 30 100.0 232 .............................. AAACAGAGATTTTAAAATGAAAGGGTGATAATTAAATGAAATATTGGTCAATATGGCTTGTACTTATAGTAAGTTTATTAGATATTATTGTTGGAATTTATGTATTATATCATCCCCCATATAATAAAAATAATCTCATTTGGGTGATTTTATTAAATCTTTTTCTTTTTGTAACTGCTATTATTCGTTTAATCTTAAAATTTTAACTTTGATTTGGCAGATGAATTTACAA 2643285 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================================================================================================================================================================================================== ================== 60 30 100.0 40 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATAGTGATGACGGCACACCCAGCATAAGCAAATTTAAGCTTATAGATGACGGATATTACAAAGTTGATGCATATATAGAGTATAATGATGAGGCAATTGAACTATGGCAAAGATATTTAGAACTTAAAAATGTAAAAAATCTTTTTAAAAGAAGAAACATATTTAATGAGTTTAAAGCTGATTTTTATAAATATGTAATTTCAATTCCAGAAAAAACTGAAAATATGCCGGCGGATGTAGAAGGTTTTAAATATGTAAACAGTGATTCAATAAATGAATATTATGATAAGGAGACGGGATTTATAACAAAAGGTGTTTTAAGTATCTGGTAATAAGATGTCGTCGATGTCCAATAGTGCAAAAAGTACTGGAGATCGACGACATCTTTATTTTTTAGACACGTTGAATTATCTGCGTTTTATGATATAATAAAGTTATAAACTTTACATAAATGGTATTTTATATTTTAAGAATTTATTGGATTTTAAGTATTTTAATGA # Right flank : AGATATTTTATTGCCGTGTCGATTACGAGGAGTTGAAGCCTAATGGACAAAAAACATTTGATTAAAGGCTATGATATTTTTGTCAATGGTGAATGGGATCTTAGTCCATTTGAACATTTATATGAGTTAGAATGCAGAGATGTTATTCAGGAACATTTAATGATTTCAATGAAGCAGAAAAAGAGGAAATTAAAAAGCTGGACGGGATTTTTATTAAGAGAGCTCCACTGTTTTATAAGGCATTAAAAGGTTTTTTAGAAGCAGAGCGAAACAATAAGCCTAAGTCTTATTGGTGGTGGTATCTTGATGAAATAGCAGATAATAAGTTAAAACCACAGATTAATTGACTATTTAACAATTTTCTTATGATGTGTATGTTGTTTTATGTTTTTTCTTTTATTGATTATATTGAGATATTAAAGAAGGATGGTAAAAATGATGCCTTTTATTCCGGAAGAACTTGCATCGTATTTAATTATTGTAGAAGGTGGATATAAATT # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2726374-2723692 **** Predicted by CRISPRDetect 2.4 *** >NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2726373 30 100.0 37 .............................. CAAAATCGGGATGGGGGAGAGAATAAATAAAATTTCC 2726306 30 100.0 36 .............................. TCAATTTCATTAAAGCCAATCCAATAATCGTAATTG 2726240 30 100.0 35 .............................. TATTTTATACACTTTGAAATATTTCCGATACGCCC 2726175 30 100.0 37 .............................. AAGGCACTGTGGAGGTTAGGTGCATTCCTTAAAGTGC 2726108 30 100.0 38 .............................. TACGTTGAATTAGGTGTATTGGACGGACATAGAATAGG 2726040 30 100.0 35 .............................. TTTGCTCTTACTAAATTTATCACTGAATCTATTGA 2725975 30 100.0 36 .............................. AAGAATACGAGATCGTCTTTTGATCTCCATCACCTG 2725909 30 100.0 37 .............................. TGGTCGAGGACGTAGCAAGTCAACAAGCCATAGCTGG 2725842 30 100.0 38 .............................. TTTCAATAGTAGGTATCCAATTCGGATATCTGACATGT 2725774 30 100.0 35 .............................. TCTTTTGTACTTGTGTTATCTTCTACTACAGGTTC 2725709 30 100.0 37 .............................. AAGACATGACACGGTCATCATGAGCACCAACAACAGC 2725642 30 100.0 37 .............................. CATTACATAGCAAAAAAGGAGATGATTGAAATTAATG 2725575 30 100.0 37 .............................. AGCAGGAAAAAAGCAGCCGGCATAGAGCCGGCTTGTA 2725508 30 100.0 37 .............................. GTTTATAGGAAGTGGAACTACAGCAGAAGCATGTATT 2725441 30 100.0 36 .............................. ATACAAAAAGAATTTAGTACCAAAGCAACAAAGCCA 2725375 30 100.0 34 .............................. GAAAATGATGTTTCAAAGTCTTTAATTGCTGTTA 2725311 30 100.0 36 .............................. TAGTCTATTTCCGGCGGTACTTCGATGTAGTCAATG 2725245 30 100.0 36 .............................. CAGTTTAGACAAGAATTCGTCTGTTGCATACTTGTT 2725179 30 100.0 36 .............................. TTTCACAATTAAAAAACTTTAGAGTTCTAATTCTAA 2725113 30 100.0 36 .............................. GAATATGCGGAAAGGCTGAAACGAAAATACCATGAG 2725047 30 100.0 36 .............................. TGAAGTAGAGATATTATTAGGTTTGTCAAATTCGAG 2724981 30 100.0 36 .............................. GATGACGTTCTTGTGGTTGCGCAGCTTGTCGGCGGA 2724915 30 100.0 38 .............................. TATACAAAAAAACGAAAGGCAATGGCATATTCTGGACG 2724847 30 100.0 36 .............................. GGTTCAAATTGTCGTATAAACGGAGCAAAAAACAAA 2724781 30 100.0 37 .............................. ATATATATCTTTACATTTTTCAAAACAATAAAAAAGA 2724714 30 100.0 36 .............................. GAAAATTGGAAATCAATATAGCTGCATCACCAACAG 2724648 30 100.0 36 .............................. TTCTATGCAGTATTAGTTTTATCTATCGTTTCATTA 2724582 30 100.0 37 .............................. CCTTTTAGGGCATTGAAATGGAAAGCTGCTTTTGCTG 2724515 30 100.0 36 .............................. CAGCTTGCCATGTTGTTTGCGCTGCATCTTGTATTA 2724449 30 100.0 37 .............................. GAAAAAATAGTGCAGGATAAACTCACAGAAAAAGATA 2724382 30 100.0 35 .............................. TCCGCCATTAATTGATAACAAGTTTTTAACGTTCT 2724317 30 100.0 36 .............................. AACATTACTCAATTAGCAATTGTTAATGAAGCAGGA 2724251 30 100.0 36 .............................. CAAGTTTGCTAATGTTGGCTCTTTTGTGCCCTCACG 2724185 30 100.0 37 .............................. ACATACAAAGAAGATGGTTCTAATGGTCAGGTTATGG 2724118 30 100.0 36 .............................. ACATATATAAAAAAAATTACCGTCTACCCTGACAAG 2724052 30 100.0 37 .............................. TTACCATCAATCCTGATGCAGTCCTACTTGATTTTGT 2723985 30 100.0 36 .............................. TTCAAGTGTAAATCCGCTTGTTACTGGAGTTCCATT 2723919 30 100.0 36 .............................. TGAAAAATGGTGTAACTAGTACGATCAATAACGTAA 2723853 30 100.0 35 .............................. GAGAGAGGGGCTCATGTTCAAAATGCTCCAGCCAG 2723788 30 100.0 37 .............................. GGCAACATTTGAATCCCTATATAAGACACACCTGCAC 2723721 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ====================================== ================== 41 30 99.9 36 GATTTAATCTAACCATAGTGGAATTGAAAC # Left flank : AAAAAATAATTTAATTGAGAAATACTATGTTTTATATAACACGCTTCCAGATAATTTAAATATAAACATAGATTTTGATGTAAATTATTATATGAAAAATCCTAATGGGAAGAGAATAAAATTCAAAAATGTTTATGTTAAAGGATATATGGTACCTTTTACAATGTCAGGTAATCCTGATTTAATAAAAGTAGCATACGAATGTGGATTAGGGGAAAAGAACAGTGCTGGATTTGGAATGATACAAAAAATAAAATGAATAATTATAAAAGATTAATCTTTGTCGACATTTCTCGATGTAAAAAACATAGGAGGTCGACAAAGAAATTGATAATGTAAAAGATTATTGTTTTTTGTTACTAAAGGGAGAGACGATGAAAATTGAATTTTTATACAATGTCAATAAACGGACTGGATTTCTTGAAAAGTATTGAAAAATAACTGATGTTGTGTTAAATTGAATTTAAGTAGGTAAGTATTTTCATGCGATTTTCGTGGGG # Right flank : ACGTGTGGGAAAATAATAGACATGAATCAAAAATATGATATAACTCAAACTTCGCACTTATAAAAGTAGCTCTGTACCTTGATAATTCAATATTATTGGGTTATAAAATAGCATGAGACCTCCATTTTTGGTATAATTGAATTATCTAAAAAATAAACCAATTGGAGACTCATGCTATGAATAGTATAACACAAAATTACCAAATTGATAATAAGGTTTCTACTTCGATTAAAAGTTTTTTCAAAAAATATAGAATTTCGGCTGCTTTAAGGTTATCGAATGCTTACAAAAGCAAGGGTATTCCCTTTATTTCCATTTTCGAGTACTTATTCTGTATGATCTTTACCAATAGATCTATGTATATGAATATGCTAATGGGTACAAATCAGGCTGGTTTTAAGAAGGACACGGTTTACAGGTTCTTAAACTCTATTCATATCAATTGGATCCGGTTTACTACTTGGCTTAGCGCACAGATTATAAATGAGACAATTACTGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCTAACCATAGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //