Array 1 37735-38668 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUP01000017.1 Pseudomonas aeruginosa strain SWPA15J=NSWPA15a IPC699_17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37735 28 100.0 32 ............................ ACTTCTCGTTGCGTCAACCCCCTGTTCTTTCT 37795 28 100.0 32 ............................ ACAGACAGCACTCTGCGAGACGACATGAACAT 37855 28 100.0 32 ............................ AGGTCGAAGGCGCGATAAAGGGGCTGGTGGGC 37915 28 100.0 32 ............................ TGGAGCCGCGCCCACGGCGGACAACCTGGGCA 37975 28 100.0 32 ............................ TGCAGCCGAGTGTCACCCCTCCAAGCATCCCA 38035 28 100.0 32 ............................ GTTGGTCCTGCTGGACGGTGCTGGTCAGGAGG 38095 28 100.0 32 ............................ TCCGCTCAACTGCGACAGCTCGCGCGCCAGCT 38155 28 100.0 32 ............................ GTAGTCCTTGCAACTGAAGGCAATGGGTGGCT 38215 28 100.0 32 ............................ CTCTGCGGACGCCAGGCGCCCGGCCAACACGC 38275 28 100.0 32 ............................ ATGAGTCGCTTGATCCCGTCGCGCATGAATGT 38335 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 38395 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 38455 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 38515 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 38575 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [38587] 38641 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48221-47192 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUP01000017.1 Pseudomonas aeruginosa strain SWPA15J=NSWPA15a IPC699_17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48220 28 100.0 32 ............................ TGGTCGTGCTCGAGCTCAAAACAATGGTACCA 48160 28 100.0 32 ............................ TTTTCTTGCACCTGGTCGTCGCCGGCGCCGAC 48100 28 100.0 33 ............................ CTCTGAAAAAACAAGGACATACGATTGAACGAC 48039 28 100.0 32 ............................ TTGTTGTTCGGGTTCAGGCCGTTGAAATAGCG 47979 28 100.0 32 ............................ TCCATGCTGCGCATTCGCTTTGACGAGGCACG 47919 28 100.0 32 ............................ GCGTTCCAGACCTCGGCCCTGGCGTAGAAGTC 47859 28 100.0 32 ............................ TGGCGCTCAAGCTGCCGATGCAGCAGGTCGAT 47799 28 100.0 32 ............................ GTGCGGTCACCGTCAACGCCAATGGCATAGTC 47739 28 100.0 32 ............................ AACTTGAATCCCTTGCAGAAGAAGTTCGCGCC 47679 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 47619 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 47559 28 100.0 32 ............................ TACATGGACCAGATCGAGCTGCCGCCGCCGCC 47499 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 47439 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 47379 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 47319 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [47294] Deletion [47284] 47279 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 47219 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //