Array 1 716-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBR01000006.1 Salmonella enterica strain BCW_2539 NODE_6_length_219769_cov_3.22722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 715 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 654 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 593 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 532 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 471 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 410 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 349 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 288 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 227 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 166 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 105 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 44 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGACGCTGGTCTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43-925 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBR01000015.1 Salmonella enterica strain BCW_2539 NODE_15_length_124809_cov_3.26919, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 104 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 165 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 226 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 287 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 348 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 410 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 471 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 532 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 593 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 654 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 715 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 776 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 837 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 898 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17058-18534 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBR01000015.1 Salmonella enterica strain BCW_2539 NODE_15_length_124809_cov_3.26919, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17058 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17119 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 17181 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 17242 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17303 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17364 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17425 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17486 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17547 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17608 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17669 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17730 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17791 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17853 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17956 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18017 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18078 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18139 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 18200 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18261 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18322 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18383 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18444 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18505 29 96.6 0 A............................ | A [18531] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //