Array 1 2099541-2101264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025829.1 Akkermansia muciniphila strain EB-AMDK-14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2099541 31 100.0 34 ............................... ATCGTATGCGGGCAGGCCCATTTCGCCGCAAAAG 2099606 31 100.0 34 ............................... TAAAAAATAATGATAAATTGAATGCATCAAAGGG 2099671 31 100.0 34 ............................... CCGGCGCGGGGGCCAACATGTCTTGTCCGCTTGT 2099736 31 100.0 34 ............................... CGGACGGCTCTCTATTCTGAAAATCAATCTCCTA 2099801 31 100.0 33 ............................... TTTATCAACTCTAATAAGTTTTTTGTTCATGCG 2099865 31 100.0 33 ............................... AGTTTCCATGATTGTTTCAACTTCTCCGGTGCG 2099929 31 100.0 34 ............................... CACATGGAACATTTACAATTTAAATCCAAAAGAT 2099994 31 100.0 34 ............................... TTTATTGCCTGCGCACAGAAGTGTCCATGTCCAG 2100059 31 100.0 35 ............................... TGTTTGGTTGATTGTTTTGTTCACCGCCCCTTATT 2100125 31 100.0 34 ............................... AAGGTTGTATGACAAATTACAAATAATTAACATG 2100190 31 100.0 36 ............................... CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 2100257 31 100.0 35 ............................... CGAAAGATATAGCGGCGGCCTTTATGCTGACTCCC 2100323 31 100.0 33 ............................... CCTACCAGATGGCCCGCATAGGCATTTCCGCGG 2100387 31 100.0 34 ............................... CCTTTGGAGTGCGTTCTTAACCCGTTTTTTAGCG 2100452 31 100.0 34 ............................... TGCTTGCCCATGCCCGCTTCCTGGAATCGAAATT 2100517 31 100.0 34 ............................... CGGCGATAAGGTTAATGGTTGCGACTACATGGGG 2100582 31 100.0 34 ............................... AGTTTGTCTTTATTCATAGTCTATTGTCTTTCTA 2100647 31 100.0 35 ............................... GTTTACCCCGGGTCCGGTCGGGCAGGGGTGGCAAA 2100713 31 100.0 34 ............................... TGAATGCTACGTCCTGCCAATTCTGGGAGATGAC 2100778 31 100.0 34 ............................... ATGCCCCCCTCCTTTCCACGATTTGAATCCTGCG 2100843 31 100.0 34 ............................... AATAGATAAAAACACTTATAACCGTATCGTGTTG 2100908 31 100.0 33 ............................... AAACGGTGATGGTTCTCTCAAGGCTAGCAACAA 2100972 31 100.0 35 ............................... ACACCGTCTTGTGCAAGTCCATGACGGCGGTATGG 2101038 31 100.0 34 ............................... AAGCTCGCTTTTAATGCGGTTCCCCTGCTTTTTC 2101103 31 100.0 35 ............................... GAGGCAGAAAAGCCAATGCGCACCCATGTTGACGG 2101169 31 100.0 34 ............................... AAAAATGATATAAAAAATATACTAAGGCCCTAAA 2101234 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGTTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAGCGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATTCCCGCCTACTTCTACGTCATCCGCTACGAGCGTCGCTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGCAGGAACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGTTGCACAAGATCTGCAAAGGGTAGGTGATAGAGAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATTCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGAAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGGTCGCACCCTCACGGGTGCGTGAATTGAAGTTTTATGTATGTTTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2593228-2589183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025829.1 Akkermansia muciniphila strain EB-AMDK-14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2593227 33 100.0 33 ................................. TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT 2593161 33 100.0 34 ................................. TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT 2593094 33 100.0 34 ................................. AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT 2593027 33 100.0 34 ................................. CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG 2592960 33 100.0 34 ................................. TGTTTCTACAAGTTAGATACATTTTAATTATATA 2592893 33 100.0 34 ................................. CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT 2592826 33 100.0 33 ................................. ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC 2592760 33 100.0 34 ................................. ATAATAGTCCGGGGAATGTACGTCTACCGCACCC 2592693 33 100.0 34 ................................. GGCAAACAGGACAAGGGACAGGACGCCGGAACCG 2592626 33 100.0 34 ................................. TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA 2592559 33 100.0 34 ................................. AATATAGGCATATCGGCCTGCCCCCTCATAATAG 2592492 33 100.0 34 ................................. CATGATTGTTTCTACCTCGCCGGACGGAAAAATG 2592425 33 100.0 33 ................................. CCCGTGCCTGAAATAAATGTCTTCCGACATCGG 2592359 33 100.0 34 ................................. TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC 2592292 33 100.0 35 ................................. CGGATGCCACCGGGTGCCGATGACGAACACCCGCC 2592224 33 100.0 35 ................................. CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA 2592156 33 100.0 34 ................................. TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC 2592089 33 100.0 33 ................................. AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC 2592023 33 100.0 33 ................................. TGCGATACGAGGCTACCCGGCCAGTTGCCTATA 2591957 33 100.0 34 ................................. ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA 2591890 33 100.0 34 ................................. ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT 2591823 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG 2591756 33 100.0 33 ................................. CCACATGGACGACCTTGCCGCCGCCGTAGACGG 2591690 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591623 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591556 33 100.0 34 ................................. TTGTATAAAGTCCACCATCTTGACGGCACCTGCA 2591489 33 100.0 33 ................................. ACAGGAACGCCCCCCCTCCGGGAAGAAACCGGC 2591423 33 100.0 34 ................................. CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG 2591356 33 100.0 33 ................................. GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT 2591290 33 100.0 33 ................................. CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC 2591224 33 100.0 34 ................................. AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG 2591157 33 100.0 34 ................................. TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA 2591090 33 100.0 34 ................................. ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC 2591023 33 100.0 33 ................................. ATCGTACTTGGGCAGTCCCATATCTTCACAAAA 2590957 33 100.0 34 ................................. AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT 2590890 33 100.0 34 ................................. AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG 2590823 33 100.0 34 ................................. TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT 2590756 33 100.0 33 ................................. TTAAAATATAGTGTTAAATTACATTCATCAAAG 2590690 33 100.0 33 ................................. CACATGGAACATTTACAATTCCAAAAGAAGCCA 2590624 33 100.0 34 ................................. TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC 2590557 33 100.0 34 ................................. CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG 2590490 33 100.0 34 ................................. CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG 2590423 33 100.0 34 ................................. TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA 2590356 33 100.0 34 ................................. CACGTGGAACATTTACAAGTTGAATCCAAAAGAT 2590289 33 100.0 34 ................................. CCCCGTATATTCATCATACATGGGCAATCCCATT 2590222 33 97.0 34 ...................A............. CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT 2590155 33 100.0 34 ................................. CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG 2590088 33 100.0 34 ................................. TGGACCGCAAAGACGGTGCAATTAAGTACACCCC 2590021 33 100.0 34 ................................. TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG 2589954 33 100.0 34 ................................. TGCGTACTCATGGCATGCGCCCGTGTACATGCTA 2589887 33 100.0 34 ................................. ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG 2589820 33 100.0 34 ................................. CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC 2589753 33 100.0 34 ................................. CGTCAAAAACGTGTTGATATCTGCGAGATCATAG 2589686 33 100.0 34 ................................. TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG 2589619 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 2589552 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 2589485 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 2589417 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2589351 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2589284 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2589261] 2589215 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //