Array 1 1867542-1868529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046848.1 Vibrio cincinnatiensis strain F8054 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1867542 28 100.0 32 ............................ ACACCGGCAAGTCTTTTTAGAAGCGGTGATTA 1867602 28 100.0 32 ............................ TTTGATGGGTGCTCTCTTTCGTTCTACGTCAA 1867662 28 100.0 32 ............................ AAATGTTGAGTGACATTGAATGCTCGCTCGAT 1867722 28 100.0 32 ............................ GAAAGCTGTGGGCAGGTAGAACGTGGAAGATC 1867782 28 100.0 32 ............................ TTATAAACGGCAAAACCGGCTAGTAGTAGTAA 1867842 28 100.0 32 ............................ GTAATTAAAGCCAAGCACATATTGAATAAATC 1867902 28 100.0 32 ............................ ACCAGCAATTAGTGATGCAGTTACATTGCTGA 1867962 28 100.0 32 ............................ ACAGTGCAAGATCTCGATGTCGAGCTAGCAAC 1868022 28 100.0 32 ............................ ATCGTGATTCCAGCTATCAGGCCCCGAACCGG 1868082 28 100.0 32 ............................ GCAAGGCACAAAAGGAAAGCGGGGCCAAAGCA 1868142 28 100.0 32 ............................ GTGTGGTGCACTTCCCCTCTCTTTCTTATTTT 1868202 28 100.0 32 ............................ TCCGAAGGCGAAGAAGGCGAAGTGATTTCACC 1868262 28 100.0 32 ............................ AGCACCGGAAAGTTTGGTGGATTAACAATAAG 1868322 28 100.0 32 ............................ GCTAAGGGTGACAAGGAGAATCAAGGCATTAT 1868382 28 100.0 32 ............................ ATGAAACGGCGAGAGCTATCAATCTCTATTAA 1868442 28 100.0 32 ............................ GATGGCTCTGCATATCAACAATGTTGACATGC 1868502 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCCGCGCTATGGGCCACAAAATCCGGTAAACCGCTGGTGGAATGCCTAGCCGATTTGCAACAAAGCAAGCCGACAGCCTTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACGAAGCAGCGCTCCCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAGTGGGCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAATTAATAAATACAATGAGTTACAACTGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTGACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : AATTAACACCAGAAGAGCTGCAAAACGCAGTAAGTTCACTGCCGTATATTGTGCACCTAAACTTCTAAGCTAGTATCAGTCAGGATAAGACATTAAGAGAATGCCACCCCTTTATATCGCTAGGTTTAGAGACAAAAAAAGACGTCCTAGGACGTCTTTCTTCTGGAATTTGGCTCCCCCTGCGGGACTCGAACCTGCGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAAGGGGGAATGGGTTTGTGCTGCGGATGGTAGCTACTCTGTTCTCATGTGTCAACTTTTGGCATTAAAAAAAAGAGAATTTTTTTGCGTAGAAGGCTTTACTTTTCTGTATCCCTTACCCCATTTGACCTCGATTCAGTTATCCACCAAATTTGTGGATAAGTGTGTTGATGAATGTTGAGTAATTATTTTCTTGATGTTTTTATCTTAGACTCCTTAGAGTGAAATCAGTTAATTTTCTCTATAACTTTATGTTTTTGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 76244-76932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046849.1 Vibrio cincinnatiensis strain F8054 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76244 28 100.0 32 ............................ TTCCGGAAGAATAACGGCTCTACAATTAGGAC 76304 28 100.0 32 ............................ TGAACCAACGTTTAATTCTGGCTGTGTCTATC 76364 28 100.0 32 ............................ TACTGGCAAGCAAAATTTTAACCGGTGGAGCT 76424 28 100.0 32 ............................ TGAGGATTTTTCTTTTGAGCCAAGCTTACCGG 76484 28 100.0 32 ............................ GCTAGAAGGAATAAAGTACGTTCCTTACTATG 76544 28 100.0 32 ............................ AGCTAATTGCTCGGCCGTTTTACTCTCACCAA 76604 28 100.0 32 ............................ TGTTGCGACATCTTCACCGCGCCCCGTTAAGC 76664 28 100.0 32 ............................ GGACAGTGGCATGAACAAAACCTTTATCGCAA 76724 28 100.0 33 ............................ CGGTTCGGATACCCGCTTTTGTTCTAAATGACA 76785 28 100.0 32 ............................ CATTGCTCAATCTGGTTCAGGTAAAACGTAAA 76845 28 100.0 32 ............................ ACCAAAGTGATGCATTGCTGCATATGGTTCAT 76905 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AATAAATTTGTAGCTGCTCTTTTTGCTATTGTTTCAGCAATTGTTCTCGTGTTTCTAATAGCTGCAAATGAAGTTGACTTTTTAATTGTCTTAAAAATGGTGTTACTAGCTTTGTTTTTTCTAGTTTGTGCTCTTGGCGTGCTAACACAAAATTTTCCTATAATTGCAGCGAGACGCATAAAAAATGAACAGGAACAAGTGGTAAGCAATAATTCGGGAGATGTATAAATTTAACAAAGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGTTGGGTATTTGAGGTGACGGCTGGCTAGTTTAAGTTCAGTTGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAAGCATTTAAGAGGGACAATCAACGCGTGGCACTTTTGGTTTGGGTGAGCATTTGAGGTTACGGCTGGTTAGTTTAAGTTCGGTTGTTAGCGTTGCTTGCCCCTTAATGCGGCGTTAGCTATTTTTCGGATTTAGCGAGAAATTTCAAATGGAATGGATTAAAAAAGAAACAACAGTTATAGATAAATTGTGTTCCAACAATCAATTGCTCGCAAATACAATTGATACTGCTTTATGGTCAGCATTTTCAAAAATTGATGAACATGCATACGGCCAAGATATTCTTCTTGCAAAGGAAGTGTTAAGAGGTGAGTTAGGTTTAGACCATGACCAAAAACCCGGAGATATAGATCTCTTAATCATCCCTATTGTAGGAGATACCCCTTTACTGCACAAAACTGTAGCGGTTGAAGCCAAAGTAGTTAGACCTACAGTTCGTAAACCAAGTAAGAATGCATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 953797-954785 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046849.1 Vibrio cincinnatiensis strain F8054 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 953797 28 100.0 32 ............................ TGGGTAGCAGAACCAGTTGCGTAAAGCTCATA 953857 28 100.0 32 ............................ TGCAAAATAAGAATCAGGATTAATTAATACAT 953917 28 100.0 32 ............................ AACGCTTTTTATGTGACAAGCTCGCTCATTGA 953977 28 100.0 32 ............................ TTTAAAATCTCCACCTTCTGTTATAACTGAAA 954037 28 100.0 32 ............................ TATGTCAAATCCGCGCGCTAGTTACTCATGAC 954097 28 100.0 32 ............................ CGACACCAGAGCCAGCGGCAAAAGTAGTGATA 954157 28 100.0 32 ............................ ATCATGCCGCCAAGCGCTGGGGCCAGAGCCAG 954217 28 100.0 32 ............................ ATTGTCATTTTTCGACCTCCTCTAATATATCT 954277 28 100.0 32 ............................ AATCATGAAGAATCGATTGGTTTTTCGTAGGT 954337 28 100.0 32 ............................ TGATTTGTTTAGCGAGGTAACCATTGATGACA 954397 28 100.0 32 ............................ TCTACAATATAAATAACTCTATCAACCAGTCT 954457 28 100.0 33 ............................ CGGGCATGGACTGCACAGCGAGTTCGCCAAGCT 954518 28 100.0 32 ............................ CCACGCAGGATAATCGGGCTGCGATGCTTGAG 954578 28 100.0 32 ............................ TCAGTCGTGGGCAGCATAACTTTTTATGGAAT 954638 28 100.0 32 ............................ ATTCTGCAGTATGACTGTGGTGTTTAGTGTGC 954698 28 100.0 32 ............................ AATTTGAGTTATTTGTTTCCAAGGCTTATTGG 954758 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAATCAAGTACGCTAAATTATTTGATTACTTTGGCAAATCAACACGGTATGTATTGGGTTGGCCTAGATTTAGCTCATGGTTATAAAGATCAAGGTTTAAATCGTTTTGGCTGCCAGCTTGGTGTTGTTTCTCAATCAGTTGATGGTGTTGCTGACGAGATTGACTTACTTTCAGCGAAGTATTTAGGGCAGAGGGTTGTGGGTTTAGTTTCTAAACTTAAGCCCAAAACATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTACGGTTGTTGTGTTTGAGTTTGGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGTATTTTAAGTTATTGACTTATATCAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAAGATGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCGTTGAATTTATTAGTTTTTAGTGCAATGCGGTGAGTTGGTCGTTGCGTTACTCACCCCTTAACGCGGCGTTATGCCAAACAAGGAACTAACAATGATCAAAGAATTTCCTAAGCCAATACAAAATATGCTTTGGACTGGTCTTATATTTATGTTTACCGCAAAGGTTCAAGGAACAATGACCGATTTAATCATTTCGAAAAAAAATCCCGATCTTAAGAAAAAGTTTGTAGCAACACCCAAAATAGTCCCAAGAGATTATCTGAAAAAAAGAGTCGAATATTGGGAAAAGCAGTTTGGTTCTGTAAAAAATGAGTTTGTAGAGATATTTTCAGAAGAGTTGAGCAGTGAAGAGGTTCGTAGAATTACAAAAATTCACCATCTAAGAAATATGATAGCGCATGCTCATGTGTCGGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 958133-958641 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046849.1 Vibrio cincinnatiensis strain F8054 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 958133 28 100.0 32 ............................ GCCACAACCAGCACCTATTTCAGATAACAACC 958193 28 100.0 32 ............................ GACGGTGATATAACCGCGCTCTCTATCCATAA 958253 28 100.0 33 ............................ ATTCGTGACAGCGGTATTAATCGACTCTTCAAT 958314 28 100.0 32 ............................ TACAGAGGTAAGAACGCAGCCTATAAAGATTG 958374 28 100.0 32 ............................ GCAAAAGATAAGCAATATTAGAAAAGGCATCC 958434 28 100.0 32 ............................ ATAAGCGGTCGTCTGCATGGTGCGAATACGGG 958494 28 100.0 32 ............................ CGTGGCGTTCGTGCCAATAACCCGCTAAATAT 958554 28 100.0 32 ............................ GGAATGTTAAGAAGTCCGGTAATCGCGTTTAC 958614 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGCGTCATTTTTGCTGAAAGAACATTATATTTATGTAAATGGTGTGTTGGCTGAATTAAAGGGGCTTGAGTATACTATTCCATGTACTGAGTTAAATAATACATTGGAAATAACAAATGATAGTAACTTTAGATTTGTTTTGAAAAGTTCGGATGGAGATGTAATTAGGTTTATAACCGACGAAACACTTAGAAAATATAGCTTTGATTCTGCTGGAAACTTAATTGCACCATAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTTAGTGCAATACGGTGAGTTGCTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAAGCATTTAAGAGGGACAATCAACGCGTGGCACTTTTGGTTTGGGTGAGCATTTGAGGTTACGGCTGGTTAGTTTAAGTTCGGTTGTTAGCGTTGCTTGCCCCTTAATGCGGCGTTATAACAATAAAGACATGGGATACAATGAAATTATTTAGCGACAGTGTAGTTATGTGGGTATGTATATTTTCAATTTTTATGTCAGGAGCCTTATTTTCTTTAATGTTCCTTGATGTTGATTTTTTAAACTTACTTAATGGTTTAAGTAGTATTGCGACAATTACTGCAACATTTTTTGTTATAAAAGCCTTAGTCGAATGGAAAAAAGATAAATATAAGAATGTCCTTCATGATGAGTTTATCGCCCTTTCAAAAGAAGCTCTGTCTGTAAGTCGTGAATTCTATATGCTTAACTATGGTGCCTTACAAAAAGATGAAAAAATATTCACATTTGCGGCTAATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 974152-974659 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046849.1 Vibrio cincinnatiensis strain F8054 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 974152 28 100.0 32 ............................ CTGATTGAATCGTAATGTTACAACGTCCCGTT 974212 28 100.0 32 ............................ AACTAGAGACTTCGGCATACCTCACATCACTA 974272 28 100.0 32 ............................ CGAGGATAATCCAGTTGACAAGCGCATTGTCG 974332 28 100.0 32 ............................ TTCCTAGCGCCGCCAGCTTGAGCAACCAGCGC 974392 28 100.0 32 ............................ TCCTAACGGGGGCGTTTTACTTTAAGGTGAAC 974452 28 100.0 32 ............................ AAGCTTAACTATTCCGCAAGACCTTACTGATC 974512 28 100.0 32 ............................ ACATAGAACAAGCGGTAAGCCTTGCAAACAAC 974572 28 100.0 32 ............................ CATAGTTTTCACTATTGATGTCAGTTTCATAG 974632 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAGACAGAATTTTTTTAAGTGTCTGCTTGTGTGCGTTTATCTTTTCTGTTTTACATTCTATGTCACACCCACTTTGGGGCATGTTTACATTCATGCCATTTGTTGTTTTTGGGGTGGCATTTCAAGTATGGCGGCAGAGTTCACCAAAAGTAGGGTTCACAATAGCCTTTTTAATTCATGCGCTTCACAATAGTTATGTCCTCTTAGTTGGCATGTTAGGACAGTAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTTTTTGAGTTTAGCGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTGATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCACTTTTGATTCGGGTGAGCATTTGAGGTTAAGGCTGGCTAGTTTGAGCGCAGTTGTTCGCGTTGCTTGCCCCTTAATGCGGCGTTAGGCGATGTTCGTGAAATTAAACAAATCATTCGTTGATTCTTAATCGTGATTCTTTGAATTGTTTCATTTAATCAATAAGTTGTTGGAGTTATCAAGTTAGTAGCCAAAGAAAATATTATCAATTTTCTGTTCTCATAAAAGTTAACGATCGAGTCTGTTCATATTTGATAAGCTTTGTGCTTCTCGTTCTTCGAGTCTTTATTCAGTACTTAATGGTAAAATGGGTTTGCGTTCAGTTTGTCTATAGTCATGATCCGCAGAATCAAGTTGCTTTTGTGGTTGCCAGAGTTTTTTCTACTGGGTCAATGCTGACTTTTCGTGTAAGTTAAATCGTGTTTGGCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1008655-1009163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046849.1 Vibrio cincinnatiensis strain F8054 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1008655 28 100.0 32 ............................ GAGCAGTGCGATAATAATCATGTAAGCATCGG 1008715 28 100.0 32 ............................ TTACTATGATGTAGCTGGTGTTTTAACTGTTT 1008775 28 100.0 32 ............................ TAGGCGCGAGGGCGCTTAACACCGGGCACAAC 1008835 28 100.0 32 ............................ GCCTGTTGATTTTGATGATGACTAGCCTCGGC 1008895 28 100.0 32 ............................ CGATTCAGGTATCCCAGTGACACCCGCCGCGC 1008955 28 100.0 33 ............................ ACACAGTCTCAAGGATTCCTGATGGCTGACTTG 1009016 28 100.0 32 ............................ GATCGAAACCATTGTCGAGAAAATCAAGTGGC 1009076 28 100.0 32 ............................ ATGTCCCGATATGGCAGGGTGTATTAATCCCG 1009136 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTATTCATGTTGATTTGGTTTTTGTCTTCTTGTTCTTCAAGTCTGTATTCTGAACTTAATGGTAAAGCGAGTTTGCGTTCAGCTTGTCTATAGTCATGATCTGCAGAATCAAGTTGCTTTTGTGGTTGCCAGAGTTTTTTCTACTGGGTCAATGCTGACTTTTCGTGTAAGTTAAATCGTGTTTGGCGATGCTGTTTTTGGCAAAGCTTTGAAATGGTTAGTAAAGTTACATAACAAAGCATTTAAGAGGGACAATCAACGCGTGTCATTTTTGGTTTGGATACGCATTTGAGGTTACGGCTGGCTAGTTTAAGTTCAGCAGTTTGCGTTGCTTGCCCCTTAATGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGGTGAGCATTTGAGGTTACGGCTGGTTAGTTTAAGTTCGGTTGTTAGCGTTGCTTGCCCCTTAATGCGGCGTTATGTGCATGGAGGCACGAATGAATATTGGAATTTATATTTATGATGAAGCAGAGGTTCTTGATTTTTCAGGACCTTTTGAGGTTTTTAGTACAGCCAAACGGTTAGGAGCAGAAAACTGGAATGTATTTTTGGTTGCGGAAACGCTAGAGCCGGTGAAGGCTCGTGGTGGTTTCAACGTATTACCTCATTATTCATTTCAAAATCATCCCTCAATTGATTTATTAGTGGTTGTCGGTGGTGTGCATACAAGGGAAATGCACAAAGAAAATGTACTCAATTGGCTAGTGTCAGTGGACAGAGAAGCTAATACAGTAGCATCGGTTTGTACGGGTGCTTTTTTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 1030673-1031060 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046849.1 Vibrio cincinnatiensis strain F8054 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1030673 28 100.0 32 ............................ ATGTTTTCCAAGCCATAATTTCCCCTCGGTTA 1030733 28 100.0 32 ............................ ATCTAAAAGAGATTCAGCAAGCTCTGCATCAC 1030793 28 100.0 32 ............................ GAAAGAGCTGGCCAGTGCCATGCAGCAACAAT 1030853 28 100.0 32 ............................ TGCAACCTCTGAGAAGAGTATGAACTTGCTGT 1030913 28 100.0 32 ............................ ACAGCGGCAAGTCTTTTTAGAAGCGGTGATAA 1030973 28 100.0 32 ............................ GACAAATTGAAACTGACGAATGCCATTGACAC 1031033 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTTGATAAAGCATCCTGAATGTAAAACGGCTGATTCAGAAAGTGCGAAATGCTTTAGTTGTGGTTCAGATAAAGTGATTTTTCAACCATTAACAGCTCATGCAGATCATCGTTATAAACATATTTGCTTATCTTGCAAAAAAATACTTTTTAGAAGTAAGGCAATAATGTCTTAAATCAGTTGATGATCCTAAGAACATTTTCAGTAAAATCAGCTGGTTGTAATAAAACATAACAAACGGTTCAAGAGGGACAACCAACGCGTGGCATTTTAATTATGCGTTGGTTTTTGTGATTACGGTGTTATGCGGGAAGTTGGTAGTAGCGTTGGTTGCCCCTTAACCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTCCGTTGAATTCTAACTTATTGATTTATATTGATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCATA # Right flank : ATATTGGTAACTTTGGCATTTTGGATCGGCCAGTTAACAAGGCATTTAAGAGGGACAATCAACGCGTGGCATTTTTGGTTTGGGTGAGCATTTGAGGTTACGACTGGCTAGTTTGAGTTCAGCTGTTTGCGTTGCCTGCCCCTTAATGCGGCGTTATGTAACCGTAAAGAAAAAGACCGCAATGCATTGAAAATTAAAGTATTTTTATGATTTCTTTACTTTGAGTTTAGCTTCTGCTTTGCATGTTTTATTCTTTTAACTGATTGTTTTAATGGGTTATTTTTAAAGTTGTAAATCCAGTTTTATTCATATTGGTTTAGGTTTAGTCTTCTTGTTCCTCGAGTCTTTACTCTGGGCTTTAATGGTAAAACGAGTTTGCGTTCAGCTTGTCTATAGTCATGATCCGCAGAATCAAGTGGCTTTTGTTATTGCCAGAGTTTTTTCTACTGGGTCAATGCTGACTTTTCGTGTAAGTTAAATCGTGTTTGGCGGTGCTATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //