Array 1 713-146 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMW01000218.1 Thermus scotoductus strain 1_S1 NODE_297_length_1602_cov_35.9593_ID_593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 712 36 100.0 35 .................................... CGATGAGGGAAGAGAGCACCTCATCCCTGGGACGG 641 36 100.0 40 .................................... GTGTAGGGCATCCACCAGGACGCCCACTCGGCGCCGTCCT 565 36 100.0 42 .................................... TGCACCTATCACCACTAACGGTGAGGATAGCCTCACAGCCTA 487 36 100.0 38 .................................... TTACCCATTCGGTACCGGACTCGTCAGTGGTAACCCTA 413 36 100.0 42 .................................... TATGATGTACCTGTCCTCCTTTTGTCATCTCCACACCTCCCT 335 36 100.0 40 .................................... ATATCCTCGGGGCTAAGGCCGTCTAAAGCCCAGTCGGCGT 259 36 100.0 42 .................................... CGCGAGTTCCATGTACTCCTGAAGCAATGGGTACCAAGCCTG 181 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CAGCGAAGGCCCTAAATACCCGGGATGTCTTGGAACCTGCGCAGCGGACTTCGGGGGGCAAAACCCCTCCCCGAAGTCCGAGGCCTAGCCCCCCAAAGCCGGAGACCTACCACCGGACCCATACAACCGGCGGGCCGGGGATCATACTATACACAGCTGCATTTTTGTGCCGCAAAGGAAACTACTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCCGGGTTTGGCAATATGGCAGACTTGACCTATATGCGGCTCCTGGAGTAAAGAGGGGGCATGACCCTGCGCGAAGCCCTGTCCCAGATCCCCGACCCCCGGGCCCGCAACCGGCAGTACCCCCTTTGGGGCCTCCTGGCCCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 648-312 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMW01000258.1 Thermus scotoductus strain 1_S1 NODE_332_length_1180_cov_176.786_ID_663, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 647 36 100.0 37 .................................... CTAGATGAGGCGCTAAATAAGACAAAAGAAGCCTTAC 574 36 100.0 39 .................................... TGAAGTTTTCGGGAAGACCCTTGAGAGTAGGTCCAGAGG 499 36 100.0 43 .................................... CATAGTAGACATCAACCCCCGCACCGCTTGCCGCACTCAGGCC 420 36 100.0 37 .................................... ACAGCTTTAGCGTCCTGCAGGGAGTAGACCCTAATCT 347 36 94.4 0 ................................G.T. | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 98.9 39 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGGTTCTCGGAGGTGAAGGAGGTGCTGGAGAAGATGCTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACCGGGAGGGTAGTTTTTACCCATCGACAAGGCTTGCAAATGTGACGTGTTCACTTTTACTAGGTGACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CGTGTCAAGATTTATGTGTAAGCGTCTGTGTACGGGGGGCATACCTCTCCCGAAGCATCCCTTCCAACACCTCCTGCACCTCGGCAAAACCCTTCAACCTCCGCTCCGCCCACCTCCCTTCCTGCCGCTCGGACTCCAGGTACAAAAGCTTGTACACCGCCTCTCCCTTGGGAAACTTGTGGTCCCGCACCTTCGTCCCACGCCTCACTTCCCGAATAAACCGCTCCATCAGGTTAGTGCTGCGAAGATAGGGCCAGAGCACCTGGGGGTAATCGTGGAAACGGAGCAGAGCCCCCGAGTTCTCCCACCAGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 5190-4795 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMW01000436.1 Thermus scotoductus strain 1_S1 NODE_52_length_11722_cov_35.5304_ID_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5189 29 100.0 32 ............................. GCTCCGGGTAAGGCGGTCGGCGATGGTGGAGC 5128 29 100.0 32 ............................. AGCCATTTCATAGTGCGGAGCAAGACGCCCCA 5067 29 100.0 32 ............................. GTAGGAAAGGAGTGGACATATGGGAGGAAAAC 5006 29 100.0 32 ............................. GCACTCTGGAGGACCGCACTCCCGGACGAGAA 4945 29 96.6 32 .........................A... AGGCCAGGGAGGACGGTTTCGCTCGCAGCCCA 4884 29 100.0 33 ............................. GGCCCTGTCCGCATGGAAAATCAGCAGGCTTCC 4822 28 89.7 0 ......................-...T.A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GGCTGGGTTTATGGTGGCGCACCGTGGATTTGGCGATAGGGAAGCTGGGGTGGTTTCAAGCCTCGTTTTCTTCCTGCATGGGTCCACTCCCCAGGTTTCCAGGTAGAAGGCTCTCAGTTCCTCGGGTGATATCGGGGAGATTTCCCGTGGAAGTGGGCTTCCGGTTCGGAACCTCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9357-9090 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMW01000464.1 Thermus scotoductus strain 1_S1 NODE_78_length_9532_cov_59.6351_ID_155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 9356 36 100.0 40 .................................... CTGGCTACAAACTCGGCGTTCCCGCCTTCCACCACTACGC 9280 36 100.0 40 .................................... TCGGCGGTGACCCCCTTGGCCTCGAGGGCAAGGTGGAGGC 9204 36 100.0 43 .................................... CCCAGGAGATCCAGGGCGGGGAAGGCCCACCCCGGGATGTGGA 9125 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 100.0 41 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : TCACCGTCTGCCTCACCGCTTCCCTTAGCATCACCTGCAAGGTATCCTGGTCCACGGGGTACCTCCTTCCTAATCCTGGTACCCCCCTTTTATACACAAACTCCTACACATAATTCCTTACACGACCGGGGATTGCGACTCTATAACTCGCCCACTACGGTAATCGTAAAATTCC # Right flank : CTGAAAAGCTCCTGAGTACGGACGTTCTGGAAGATCGCAACCTGCGCGTATTCGGTTTCCAGAGGCCTCAGCGCTTAGAGAAAGGCATGATCTGGGCTTTTCCTGAGGACCTGGAGAAGGCCTTTGCCGATTGGTTACCTGGTACCCTGCCGACCCCTTGACCAGGGCCAAGGGTGGTTTGGGGGTGGTTACGGTGCGTAGGGGCGTCCTGCAGCGCTGGAGGGTCTGGCCTTCCCCGCCCAAGTCCCACCCGCCCAGGGGGCGGAAATCCCAGGCCTCCCAGGACAGAGCACCCTAAAAGCACGCTAGCGGCTCACTCCCACGCTAAACTTCTAGCTTAGCAAGTACCTTTTGCAGGGCAGGGTCCTTCTTGGCCTCGGCCTTCAAATCCTTGGGGTTGGCGAGAAACTTCTTCTCCTGGAGGGCCAGCCGGAGAACGGCTGTTTCCTCAGGGGAGAGGGATACTATGACCAGAGCCCTTTTTCGCAGAAAGTCCGTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 4548-3115 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMW01000471.1 Thermus scotoductus strain 1_S1 NODE_84_length_9013_cov_31.3052_ID_167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4547 29 100.0 33 ............................. CCGCCAGGAGTTGGGCGCTCCAGGCGGGCTGGC 4485 29 100.0 32 ............................. ACAGCCCGGAGGCCATCCTCCGGGCATACGGC 4424 29 100.0 32 ............................. CGAGGCCACCGCCGCCATCAAGCAGGCCTTCG 4363 29 100.0 32 ............................. GTTGACCGGGTAACCGACAAGGACCTCAGCCC 4302 29 100.0 33 ............................. TCCGCGATCCAGGACTCGCCGATCTCCGCGGCA 4240 29 100.0 32 ............................. GCAGAACCGATGCCGCCTGTGAGGCGGCGGAA 4179 29 100.0 32 ............................. AGCTGGAGGATCCCCGCCGAGGCGATAATGCC 4118 29 100.0 32 ............................. CGCCCCCGGAAGGCGAACACCTGCAGGGGCTC 4057 29 100.0 32 ............................. TGCCCCCGGAAGGCGAACACCTGCAGGGGCTC 3996 29 100.0 31 ............................. AGGGCCTGCTTCCGCCCTGCGATAATGCTCC 3936 29 100.0 32 ............................. TGCCCCCGGAAGGCGAACACCTGCAGGGGCTC 3875 29 100.0 31 ............................. AGGGCCTGCTTCCGCCCTGCGATAATGCTCC 3815 29 100.0 32 ............................. TGCCCCCGGAAGGCGAACACCTGCAGGGGCTC 3754 29 100.0 31 ............................. AGGGCCTGCTTCCGCCCTGCGATAATGCTCC 3694 29 96.6 32 ............................T TGAGCCCCTTCGGCGTGCTGATGAGCAGGGCC 3633 29 100.0 32 ............................. AGGCTCTATTTCCGGGCCGAGTGGCTGGACGA 3572 29 100.0 33 ............................. AGAATGGGCTCGTGCTGATAGTCGTAGTCCAGC 3510 29 100.0 32 ............................. AAACGCGCCGCTTCCGGCTGTTCCCCCTCTCC 3449 29 100.0 32 ............................. GTCGGGTCGTACAAGCACCTGTGGCATGTGCC 3388 29 100.0 32 ............................. CGTATACGCCCCCCGACCGTTTGGGCGTCCCA 3327 29 100.0 32 ............................. CCAAGCCGTTCCGAGGCCACCAAGGCGAAGCG 3266 29 100.0 32 ............................. AGACGGCCCTTATCCACCACCTCAATCCGCCG 3205 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 3143 29 89.7 0 ..............C........A...T. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : AGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1682-3115 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMW01000056.1 Thermus scotoductus strain 1_S1 NODE_150_length_5294_cov_140.111_ID_299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1682 29 100.0 32 ............................. GTAATCCGCAACAAAGAAGAGAAAAATGGAGT 1743 29 100.0 33 ............................. CTCCGGGTAGTCGCCGACGGGCGCGTCCTCCAC 1805 29 100.0 32 ............................. CACCGCTGGCCCGAGGGCAAGATGATCACGCA 1866 29 100.0 32 ............................. GGGAAGGCCAAGGGGAAGGGTAAGGCCAAGGC 1927 29 100.0 32 ............................. AGGGAGTTGGCGGAAGTGCTAAAGCGCCCTAT 1988 29 100.0 33 ............................. GCGAAGCGGATATAGCCTCGAGGGGCCAAGACC 2050 29 100.0 32 ............................. TGCAGATGAGCCCAGTAGCGCTGACGCCCCCC 2111 29 100.0 32 ............................. GGGGCCGCGTGCAGCCTCCTCCAGTGCGGTCA 2172 29 100.0 32 ............................. GCCCCCCGTAGGGAAAGCGCCGCCAAGGAGGC 2233 29 100.0 32 ............................. GAGGTGAACTGTGGAGGGGTTGGTGCCTGATG 2294 29 100.0 32 ............................. CTCACGGCCATGACCCACAGAGAAACAAGGAA 2355 29 100.0 32 ............................. GCCCCCCGTAGGGAAAGCGCCGCCAAGGAGGC 2416 29 100.0 33 ............................. CGGCGCTCCCCTGGAACGCCCTAGGAGCGGCGC 2478 29 100.0 33 ............................. CGGCGGGAAAGCTCAGCGAAAAAGCTTCTGACC 2540 29 100.0 32 ............................. AACCCCCCGGAGATACCGGCGGTGCGGGCGGA 2601 29 100.0 32 ............................. AGCGGCACGGGCACCGGCAACCTCACGGTGAG 2662 29 100.0 32 ............................. GTTCCTCATGCTTGCCTCCTGAGCAGGCTGTG 2723 29 100.0 32 ............................. CGGCAACCGTACTCGGGATGAGCGGGAAGCTC 2784 29 100.0 30 ............................. GAGGCCCTGTAGTTGCCGTTGGGCACCGCC 2843 29 100.0 33 ............................. GAAATGGAAGGCCGCGGCTTCACCCATGAGGAC 2905 29 100.0 32 ............................. TTGGCGACACTGCTGAAATTCCACCTGACGGC 2966 29 100.0 31 ............................. CCCCTCTCCCGGAGGATTTGCCCGTAGTGGC 3026 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 3087 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GGTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAACATGTACCTGGCACCCTATGCTTGGCTAACCAGAACCGGTTTCGGAATGTTGAGGGAGATCCCGGAGCACCTATTGGCCCTGGGGGTGGACCCGGTCACCGACAGGAAGCACTCCTGGGATGGACCCGAGATGGAGGCGGTGCCGGGCCACCCCCGGGTCCTGCGCCCCCTCAACTACAGCCCGGCCACCCCTAGGAAGGGCTTCGCGGTTTTAGAACAAGTTGGGAACCCATACCCATGTCCCCACCCTGGACACCCGGGTGCTGCCCAAAGGTACAGCCTACGTCTCCGACGTGGGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1781-239 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMW01000064.1 Thermus scotoductus strain 1_S1 NODE_158_length_4900_cov_29.0893_ID_315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1780 36 100.0 40 .................................... CACATCTAAACCCATTTCTTTTGCGATTTCCCAAGCGATA 1704 36 100.0 40 .................................... CGATACTAGTTTTTCCTATTCCCCTATCGCCGAGGAATAG 1628 36 100.0 43 .................................... CCTAAATCCTATGCCCCTCTAATCCTCAACTTCCTCACCTTTA 1549 36 100.0 42 .................................... TCCTCGTAGCCTCTTCGTCAAGCTTGATGACGGGGATTATGC 1471 36 100.0 38 .................................... GCCCTTATCCGTGGCCTTGACTTTGGCGCTTAGGATGG 1397 36 100.0 40 .................................... TTGAGCGTAGTTCCTTTCTTGAGATATCCCCCCATACTTT 1321 36 100.0 41 .................................... CTTAGCCTCCTTGGCCTCCAAAGCCCCCTCGGCCTCGGCCT 1244 36 100.0 38 .................................... ATCGGCGTGCAAGCCCTTGAGCAGGTCAAGGGCGTAAA 1170 36 100.0 37 .................................... TCAACCGCTCCGGTAAAACCGCCCTTTTGGAGGAGAT 1097 36 100.0 41 .................................... CAGTGTCTCCCGTGAAAAGTCTCCCCTTACCTTTAGCAATA 1020 36 100.0 38 .................................... GGGACCGGGTGTCCGTCCACCCGGTGGTATGGCAACCA 946 36 100.0 41 .................................... CTCCCTCTAGCCGTCCCATCCTTGGCACTCTCCGCAGACGG 869 36 100.0 39 .................................... TCCTTAAGCAGGCTGCTAGAACTAGTCTTTGCCCTAAGC 794 36 100.0 38 .................................... GTTCTTGAGGCGCTTAGGCTTGAGGACCTCCACTAGGT 720 36 100.0 38 .................................... TCCGGTCAAGTGCTCCTTAATCGAGGCCACCGTTATAT 646 36 100.0 38 .................................... TATCATCCAGGAGTTCGTACACCTGACCATCAATCTCA 572 36 100.0 40 .................................... TAAACATGGGCACTACGCTTGAGTGGGGGACTACCTCAAT 496 36 100.0 36 .................................... GCTCGTAGTCGGCGTGGACAACGTCGCCGCATATGT 424 36 100.0 39 .................................... CGCAGTGGCACAGCAGAGTAACGCTCCCCCTCTTGACAG 349 36 100.0 39 .................................... GCAGTGAAAGGCCAAGGGCAAAAAAAGCCGTTCAAGGGT 274 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 21 36 100.0 39 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATAGTCAAGAGGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTCCGGTCGTGTAAGGAATTATGTGTAAGGGTATGTGTATGAATGGGGGTACCAACGGGAGAGGAGGTACCCCATGGATCAGGATACCCTCCAGATGATCTTGAGGGAAGCAGTGAGGGAAACGGTAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //