Array 1 701588-701982 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061341.1 Lactobacillus kefiranofaciens strain 1207 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 701588 29 100.0 32 ............................. AACTTCTCCAGCTAATGCATGAGGCGTCTTAC 701649 29 100.0 32 ............................. AACGTTTTTGTTTCGTTTTCACTTGAACGTAA 701710 29 100.0 32 ............................. AACGTTTTTGTTTCGTTTTCACTTGAACGTAA 701771 29 100.0 32 ............................. AATCTTGTAACTCACCAAAAGTATAAGCATCA 701832 29 100.0 32 ............................. AATCTTGTAACTCACCAAAAGTATAAGCATCA 701893 29 96.6 32 ............................C ATCATTAAAGTCAATGAAATATGTAAATAATA 701954 28 93.1 0 .................T......-.... | A [701975] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TGCTAGTTAAGTAGTGATATCCGTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATTCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : CTGTCCTGGAACGTACAGAAAAATAGCTTGCAAACGCCGGTGTAACGGCATTTTTAGGTGATCGGAAGTGTACTGATTCTGGCTTTAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATTGTCCAGTTTGGCAGGTCGTGTCGATTAGGGTAGTGAAAGTAGAGGTGAGCCTTGATATGGTAGCGTTTGTGGTATGTACGAATCGGTCAGTTTGGTACTAAGGATTGAGTTAGGCAGATTGCAAGAAATAACTTGAACGAATTTAGTGACGTAGATTAAGCAAGAAGATCTCGATTGGTGTATGCCAATTAAGACATTTAAGTGGCCGTGAATTCAGATACCAATTGATTTGAACCAGTTGGTAATCACTTAGTTCTTCAATGGCTTGTCCCTTGGGAATAAACCGTCGCAAAATTCGGTTACGGTTCTCATTACTACCGCGTTCATGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1067127-1066489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061341.1 Lactobacillus kefiranofaciens strain 1207 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1067126 29 100.0 32 ............................. TATACCGGCTGTCAATCACATGTGGTCAAGGA 1067065 29 100.0 32 ............................. AGAACCGTTAAGGAAGTTCAGTTGCCAACGAA 1067004 29 96.6 32 ............................C TATCCTGACCGAATTTACTTATTACAACCAGA 1066943 29 96.6 32 ............................C ATGTAAGCTACGCGATCATCGTTTGAAAGATC 1066882 29 100.0 32 ............................. TAACACAATTTAACGCGTTAAAAAAAGAACTA 1066821 29 96.6 32 ............................C TTGACCTTGACCCTTGTAACCAATCAAGACGG 1066760 29 100.0 32 ............................. ACTCTTTTGGCTGATACTGCAGAAAATATTTT 1066699 29 100.0 32 ............................. ATTGGCGGTCAGAATTATCTCAGCAAAAATAA 1066638 29 96.6 32 ..G.......................... TAATTTTGTAGCGCCCTAAATTGTAACATTCA 1066577 29 96.6 32 ..G.......................... CAATGAAGTTACGCGCTATACTGATTTTATTC 1066516 28 82.8 0 ..G....................T-..TA | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.9 32 GTATTCTCCACGTAGGTGGAGGTGATCCT # Left flank : GCTTATAAGAAATATAGTCAATTATGGCATAGTATGTATCAAAGTAAAAAGGTAACTAAAGAAGCAATGGAAGCAGCACTTAATACTTTCATGCCGCTATATGAAAAGGCCCCACAAGAAATGCTAGTGGTTGATTCAATGGTTGATAGTTCCCTTGCTGCAATGCAATTTATGCTAGTTGCTCGTGAGCATGGCTATGAAACTAATGCAATGGCTGGATATGATGCTAAGAAGGCGGCAATTGTAATGGGGCTTGATCCTAAACAATATGTTCCAGTAATGGCAATTGCTATTGGTAAGCATGATCCAAAGGCTGAAGCAGAAATTACTACTACTAGATATTCTCTTGCTGATCTTGTTGATTATCAATAAAGTTTTGGAGTAGATTTTAAGTATTCTGTGTAGGGAATTGTAAATTAAGTTAATAATCTAGTTTAGAAAGTGAATAAAAATAAGAGTTTAGCTTTTCAGAAATGGCTTGATTACAAGGATTTTTTACT # Right flank : TTCACATAAAAATATCCTCGACTGTAACACTGTAACTGTCGAGGATGTTCATTCTATCGGTCTTTGTTATCTATTAATTTGTAAAATGTCTTCCTTAGCATGAATCAGTTCAGTGACAAACTGGCAATATGGCGTAGCTACACTGTGTTTTAACCCTTTGCGCCAAACTGCACCATCAATATAATCGATTTCAGTTGGTCGATGGTTTTGAATTAAATCTTGATACATTGAAGGATAATGTGGAGTATCAAATAGGCTTTCTACATGTCTAATAACCTCGGCACGATCTAGATTGACGCCTTCATACTGAGCGATATCAGCGAATTCTTGTACAATATGTCTAGTTAAAGTATCCGCTTCATTGGTATGACCATATTCTTTGCAACTAGCTCCCAGCAATGCGCATAAGGCATTAACTACACCGTTAACACAAGCTTTACGCCATATAGAATACATTACGTTTTCGCTATAACTTGCGTTTAAACCGGCATCATCTAAGA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTAGGTGGAGGTGATCCT # Alternate repeat : GTGTTCTCCACGTAGGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2098137-2099446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061341.1 Lactobacillus kefiranofaciens strain 1207 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2098137 28 100.0 33 ............................ CCGTTCTTATCATACATCCACACAATGATGTCA 2098198 28 100.0 33 ............................ GCCCTGTCCCTAAGGTTACTAAGACCGATGCTG 2098259 28 100.0 33 ............................ CCGGTACGTTGGACGCTGGGAAAATCAATGTTA 2098320 28 100.0 32 ............................ AGATGCAGACTAAGGGCTTAATTGCTCAGACT 2098380 28 100.0 33 ............................ AAAACTACTCGATTAATCATTTTTGAGCCTCCA 2098441 28 100.0 33 ............................ CTTGATTTATGAAAAATCGGAATGCACTGATTA 2098502 28 100.0 34 ............................ TCCTACCATGATTTAAACGGTGGAAGTCATTACG 2098564 28 100.0 33 ............................ TTGAGAAGTCCAGCTGCTGGGCCGCCATCACCG 2098625 28 100.0 33 ............................ AGGCAGTCCCCATGAAATAATTTTTCTGTCACG 2098686 28 100.0 33 ............................ TTACGGCCAGTAAGCTCAATTGCCTTAGCCATA 2098747 28 100.0 33 ............................ CTCATGTGAACTCAAGGAGTGGTGATTACTTAG 2098808 28 100.0 33 ............................ CATAGCGGGGCTACCTAAAGATAAGGGTCGGGA 2098869 28 100.0 33 ............................ TTATGAAATCCTTTATTATGCTTATAAAGTGAG 2098930 28 100.0 33 ............................ CCTTCATTAGTTCGCGACGAGCTGATGGAGGTA 2098991 28 100.0 33 ............................ TTGACTTCTAAACACTTGTTCTTGGAAATGTAA 2099052 28 100.0 33 ............................ TTTCTACTTGAAAGGAAAGACCTTAACTTCACG 2099113 28 100.0 34 ............................ CTTGCTTGTATCGTCTCGTGATACATGCTTTTTA 2099175 28 100.0 33 ............................ AACCTTCATTAGTTCATCGAGCTGATGGAGGTA 2099236 28 100.0 33 ............................ TTGGAGAAACTATTGCAAGAGAAATCAAGATTA 2099297 28 100.0 33 ............................ TTGGATTAAATCTAATTCATCTGGATTCCTTAA 2099358 28 100.0 33 ............................ GCAGCAACTCCAGTTGAACCACTGCCCATCGTA 2099419 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 22 28 100.0 33 GGATCACCTCCACATACGTGGAGAACAC # Left flank : AGCCGAAAATGTGTCCTGGCTTAAAAATCTAGGTGTCAAATTCAAGGGTGTCGCTACCTTAGGTTCAGGACTTAATACCTGGCATATGTTTGATGGTTTAGGTCGTCATGCAATTCACGATGCACCTGAGCCTTACGCTAAAAAACACAATGTTGAATATATAACTTCAGCTACGGTAACTAAACTTAATCAAGATAGCTCTGACAAGATCACCGGTATAACTATTCAAGATTTTGAAACTAAAAAGGCGAAGAATATCGCAACTAAAGCAGTTATCCTGGCAACTGGTGGATATTTAAATAACCGTGAGATGCTAACTAAATATTTCAACTCTAATTCTAATCGAATTGTACCAATGAACTCTGGTAAAAGCGGTGGCTCAGGACTTAAACTTGCTTGGGCAACCGGTGCTAAAAAATTTAATTTAGGAATGGCTATGATGTTCGGTGGACAAATTAAAGAAGATAAGATTCCATCTTACAAATATTGGAAGACTGATA # Right flank : CACTAAAAGGTCCTTGATCCATCAACATTTCTAAATTCTTAGAAGCTCATTTTTATTCAGTTTAGTCAGAATAAAATGAATCCTAGCATTTTCCCCTTTAATTATATCATGCTACCATCATGTACTTAACATCCAAAAAAGGATACCCATCAGGAAAATACATTCCTAATTGAATATCCTTCAATCCTTTTAATTTTTTATCCTGCGAAGCAATTTTATCTAATCAAAGATCCTCACCATTTGAAAGGTAATCCAATAATTTACCTCGTCTTTATAACGAATAAAAATGCAAGAAAAAAGCCTATTGATCTTAGAACTATCAATAGGCAAGCTCAAAAATTTAGTGACTATCTAACCATCCTTTAATACTTTAGCTATGAAATTCAATTTTTGATAAATTGAAGAAACTTTTCCATTTAGAGCAAAAAACATCAAAGTTTAGTTCGATAAATTTTTCTAGCTTTTTTAATTCTTTATCAGAAATATCTGTACGATTGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //