Array 1 1503019-1504248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017184.1 Enterobacter roggenkampii strain DSM 16690 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1503019 28 100.0 32 ............................ TGTGCCCACTGACACCATCACTCACAGCGGTG 1503079 28 100.0 32 ............................ TTGACGGTCTGGCCCAGGGCATCCGTCAGGGT 1503139 28 100.0 32 ............................ TGGTGAGCTGCGGCGAACTGTTGGAGCTGGTT 1503199 28 100.0 32 ............................ AGCAACAACAGCTAGACATCAAAATCACACCT 1503259 28 100.0 32 ............................ CGCACGGTCACGCAGCCAGCGGATATCCCATA 1503319 28 100.0 32 ............................ CTTATCACGCGCCGCCCCCAACCCTTCTAACG 1503379 28 100.0 33 ............................ CTCGGCAGATATTACTCTGCCCGACAAGGAAAT 1503440 28 100.0 33 ............................ CGCCGACGTCGCCGTCGTTCTGACGATGATGGA 1503501 28 100.0 32 ............................ ATATTCATCACCAGCTAAGCATGGGTAATAAT 1503561 28 100.0 32 ............................ ACCCTGGCATCGGGCCAGAAAATGACAAAAGA 1503621 28 100.0 32 ............................ TTCGCAAAGGAGTGCAGTCATGAGCAAATCAC 1503681 28 100.0 32 ............................ AAAACCAGCGGCGTAACACCTGCAACCGTAAA 1503741 28 100.0 32 ............................ CAGTTTGCGAGGGGAAACGCCTTTGACCTCTG 1503801 28 100.0 32 ............................ ATTTGACTTGCTGGATGTTAGTTACGCTGCAC 1503861 28 100.0 32 ............................ TCCTGCTCCTTCACCTGCTGGGCAGTGATGTT 1503921 28 100.0 32 ............................ TGCCGGGGTCTTTCCGTTTTACCTTTCAGCGC 1503981 28 100.0 32 ............................ TAAGCCCGTCCCGTGTCCGTTTATGCTCCAGT 1504041 28 100.0 32 ............................ GATATCCATATCAATAGGCAGGGCTGACAACC 1504101 28 100.0 32 ............................ GGTTGCCCAGCAGCAGCGAAGGGATATCAACG 1504161 28 100.0 32 ............................ TGAGAGCGAGAAAAGCAAGATTGAGAGCTACG 1504221 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGCGGGGTGGGCTTTATCAGCGGCATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTAACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGTTAAGCGTCGGTGGTTAGGGTCCAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAGCGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCATGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGAGACGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGCTTTCACGTCTTCTTCCACGATAGCCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1520404-1521512 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017184.1 Enterobacter roggenkampii strain DSM 16690 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1520404 28 100.0 32 ............................ AAAAAATTCAAGAAAGGGAAGGGAAAGACACC 1520464 28 100.0 32 ............................ AGGGGGAATTGAGTAAGATCGCAAACTCTCAA 1520524 28 100.0 32 ............................ GTATAGTGAGACATAAGCTCTTTCGCTCCGAT 1520584 28 100.0 32 ............................ AGTGGCAAGCTGGCCGCAGCCATCTCTAAAGC 1520644 28 100.0 32 ............................ TTATCATAAGCGGGCTATAGACCGCTGGTATG 1520704 28 100.0 33 ............................ CCGGAACTGGCAAAACAATGTTCAGCACCACGG 1520765 28 100.0 32 ............................ CCCGTCGCGCTCATGAATCGCTCCGCTGCGGT 1520825 28 100.0 32 ............................ ATTGACTGACGCCACACGCACACCTCCCCCCA 1520885 28 100.0 32 ............................ CGCTATATTCATGATGGTTCGTACACAAACAA 1520945 28 100.0 32 ............................ TCGGATGTTCTCGCGCCAGACTCGCTATGATT 1521005 28 100.0 32 ............................ AGACCAGCGTGGCCACATTGCACCTGCTTCAT 1521065 28 100.0 32 ............................ TTATCGCAAGTCTTGTCGTCGTGGCGGTGATG 1521125 28 100.0 32 ............................ TCGCGGGGCTATGACTTGTCAGCCCATCGCCC 1521185 28 100.0 32 ............................ GAAGACATGAAGCGCTCAATGAGAGCCAGGAT 1521245 28 100.0 32 ............................ TGACTGGGATAAGCACGCCACGCCTGGCGCGA 1521305 28 100.0 32 ............................ GGAGATGAGTAAAGTGGTGCCAGCCTGGCATC 1521365 28 100.0 32 ............................ TACGGCGGGAATTGACACCACGACCACGGGGA 1521425 28 100.0 32 ............................ AACGACGGGCGCGGTCTTGATACGACGCTGCT 1521485 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : ACTCCCACAAACGCAGCCCGTATGTCGTTGCCTCGGGGCTTATCTGGAAGAGGTAAAATCCGGACTCACAGAATCTATGCGTGATTTTCAGGTGGTGGAATTTGCGGACGAAGCAGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGTCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCGATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATAGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATTTAGTTTGTGGCGTCGGGGATAATCCCTGGACGCCACTGGCTTGACCTTTTTTTTGATGATTACGTAACTTATTGATTTAGAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : AAAGGCCGCCAGGCTTTGATGTCATGGAAATGGCGTTACTGCCACACGGACAGCACACGTAACAATCTCTCACAAATATTCACCGCGTCGATTTAAAAACGCAATACCATCATACCCACGCTCTCCATTTTCTGATTAAATAAAAATCCCATTCAGGAGTTAATTATATTGCTATTGATATATTATTTGTAAGAATGATACATCAAAGGAAAAAATGATTTTTTGTTTAATTATCACCGAAATTTCCATTCATTTGATATCTATCACATTTGCATTTGTCTTATGTCCGATAACATACCCGCATTCAACACCTTGAAATAAAAGCCGTTGCCATGCCTGCAAATAGCATCACCCCTACAGATTTGAAAACTATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGTGTTGAATATGTCACCCAGGAAGGAAAAGAATCTTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1531065-1532053 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017184.1 Enterobacter roggenkampii strain DSM 16690 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1531065 28 100.0 32 ............................ TGGTGACGCTACTGTCTTCACGACTCAGCAGC 1531125 28 100.0 32 ............................ TCTTGTACGCAAACATCTTACCGATTTTTTTA 1531185 28 100.0 32 ............................ CATCTCACGAGATATTTTTGAAAACGATGGAT 1531245 28 100.0 32 ............................ TCCACGACGCAGCAAAGTTAATCCAGGGGGAA 1531305 28 100.0 32 ............................ GCAAGCCTGCCGGACTTCTGGAGGATCTCTCC 1531365 28 100.0 32 ............................ GACAAGCTGCTGCGTGAGTCCGGCTTCGATGA 1531425 28 100.0 32 ............................ ATCGTGGCGATCAGGTGTGACACCTCGGAAGA 1531485 28 100.0 32 ............................ AACGACCGCAGCGAATATCACTGATGTGGTGA 1531545 28 100.0 32 ............................ TGGACCCGGTTTTCTGAGAAAAAAATGACAAA 1531605 28 96.4 32 ....T....................... TGCTGCGCAATGGATGCCGCCGCCTGGTTGCC 1531665 28 96.4 32 ....T....................... TGCGCGAAACCAGACCAGCGCACGCGCGTGGG 1531725 28 96.4 32 ....T....................... GTGGCGTCGTCGTTCGTGATCGCGGCGCGAAT 1531785 28 96.4 32 ....T....................... TCGTTATTATTCTCACCCGCCCGGGTAAAGCC 1531845 28 100.0 33 ............................ AACCCGGTCGCAGTGTTTAACGCACTGGTCGAA 1531906 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 1531966 28 85.7 31 A..........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [1531990] 1532026 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTCTCGCCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGGGATATTATTACA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //