Array 1 108167-106269 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBAS01000018.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-173-13 173_13_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108166 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 108105 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 108044 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 107983 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 107921 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 107860 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 107799 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 107738 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107677 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107616 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107555 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107494 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107433 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107372 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107311 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107250 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107189 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 107128 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 107067 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 107006 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 106948 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 106887 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 106826 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 106765 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106704 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106643 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106582 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106521 29 100.0 11 ............................. CGGCCAGCCAT Deletion [106482] 106481 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 106420 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106359 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106298 29 93.1 0 A...........T................ | A [106271] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125698-124449 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBAS01000018.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-173-13 173_13_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125697 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 125635 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 125574 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 125513 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 125452 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 125391 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 125330 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 125269 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 125208 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 125147 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 125086 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125025 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 124964 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 124903 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 124842 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 124781 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 124720 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 124659 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124598 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124537 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124476 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //