Array 1 162647-160787 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMR01000021.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015003 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162646 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162585 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162524 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162463 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162402 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162341 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162280 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162219 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162158 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162097 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162036 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161975 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161914 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161853 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161792 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCG 161731 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161670 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161609 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161548 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161487 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161426 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161365 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161304 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161243 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161182 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161121 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161060 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160999 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160938 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160877 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160816 29 93.1 0 A...........T................ | A [160789] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181502-179154 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMR01000021.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015003 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181501 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181440 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181379 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181318 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181257 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181196 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181135 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181074 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181013 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180952 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180891 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180830 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180769 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180708 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180647 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180586 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180525 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180464 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180403 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180342 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180281 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180220 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180159 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180098 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180037 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179976 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179914 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179853 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179792 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179731 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179670 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179608 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179547 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179486 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179425 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179364 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179303 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179242 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179181 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //