Array 1 152879-152525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSWE01000029.1 Corynebacterium diphtheriae bv. gravis strain 2792 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 152878 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 152816 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 152752 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 152688 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 152624 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 152560 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 6 36 95.8 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 63545-61745 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSWE01000032.1 Corynebacterium diphtheriae bv. gravis strain 2792 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63544 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 63483 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 63422 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 63361 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 63300 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 63238 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 63176 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 63115 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 63054 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 62993 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 62932 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 62871 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 62810 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 62749 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 62688 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 62627 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 62566 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 62505 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 62444 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 62383 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 62322 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 62261 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 62200 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 62139 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 62078 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 62017 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 61956 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 61895 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 61834 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 61773 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : GGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //