Array 1 4657-4201 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMB01000029.1 Proteus mirabilis strain TUM4660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4656 29 100.0 32 ............................. TTGTAGATAACTGCGTTAATGGCTTGTTTGTT 4595 29 100.0 32 ............................. GACAAAAACTTTGCTATCATCACGCCAAAAGA 4534 29 96.6 32 ............C................ GCAGTAAACCAATTCATATTATTTGGATCTTT 4473 29 96.6 32 ............C................ TTATCCACGGCTTTAAAAAGTCGAGCAGGATT 4412 29 100.0 32 ............................. GTTCTCTGCAAACCAGAAAATGGACTGACCAG 4351 29 96.6 32 A............................ GACAAAAACTTTGCTATCATCACGCCAAAAGA 4290 29 96.6 32 ............C................ TTATCCACGGCTTTAAAAAGTCGAGCAGGATT 4229 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTAAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGGTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGTGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCGGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : GTGTTCCCCGTGCATACGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14376-13553 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMB01000029.1 Proteus mirabilis strain TUM4660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14375 29 100.0 32 ............................. TCATATCTTGATGAGCCGATAGTTATTACTGT 14314 29 100.0 32 ............................. TTAGCAACAAATACAGTTTCAGGCGGTAATTT 14253 29 100.0 32 ............................. CTTCTGTTTTTCTGTTTTACTGAGAGAAACGT 14192 29 100.0 32 ............................. CGCCGTCGAGTTTATGTGTCAGTGGTCGATGG 14131 29 100.0 32 ............................. CCACCTCCGAATATTGATCCTTTCGCCTTTTC 14070 29 100.0 32 ............................. CGCCATTTGTTTATTATCCGGTAGCAGTTTAT 14009 29 100.0 33 ............................. TATACTTTTTCCTGATAATGGCGGAGATAATGC 13947 29 100.0 32 ............................. GAGTGTGGCATGGGAAAAATGACATTCGTAGT 13886 29 100.0 32 ............................. GAGAAACACATATCCGTCATGGCTGAACACCA 13825 29 100.0 32 ............................. TCAATCATCACTAGCACTGGTATTTTGAAAGA 13764 29 100.0 32 ............................. AAGACAGAGTTGATATTGATATCTCACATGAA 13703 29 100.0 32 ............................. AGCGCAGAGTGCACGGTGGATTTCCTGAGGCT 13642 29 93.1 32 .A............T.............. GAAATTGAACGCATTTTGCTGTTTATTGGTAA 13581 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : CCCCAATGCAAAACCTGCGCTTGATTGTCCCGTCGTATTTCCTTATGCGCCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGGGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGTGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATCGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATATTACCGACGTTGGTATTACTTATTAGTGGAATTTTAATAAATGCTCGACTTTTTAACCAGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATTTTGTGATATTAAGTGGGCAATAAATTTTGAAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAAAATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //