Array 1 49341-50584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSS010000033.1 Aphanizomenon sp. FACHB-1401 contig33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 49341 36 100.0 38 .................................... CAGCTATCAGCCGCTCGGCTACCTCTCCATTAATCTGA 49415 36 100.0 37 .................................... ATACCTTGCTCAAAGGCACGACCATCAGCATAGTTGT 49488 36 100.0 41 .................................... TTGGTAAGCACTAAATGACATACTCAACGGGTTACGATTAC 49565 36 100.0 41 .................................... TTCCCAATCTATGCCTAATTCCATTAAGCATTTGAATTTAA 49642 36 100.0 40 .................................... GATTTAATACTAGATGAATTAATCAACCAATCAATGATAC 49718 36 100.0 37 .................................... GTTACAGGAAGTAATGGTACTAACTTAGGGGGGTTAA 49791 36 100.0 40 .................................... AAATGGGTTTTGTTGGCGGTAAGGTTTTAGAGCCTAGTTG 49867 36 100.0 42 .................................... CAACAGATAACTATCAGTGCCTCAACAGATAACTTTTATTTT 49945 36 100.0 42 .................................... TTTCGTTGACTTATCGGACAATAATTATCCGTCGCTATAACT 50023 36 100.0 34 .................................... TATACTCCAGGTATTCATGATCTTTAAGCATCCA 50093 36 100.0 40 .................................... TTGAGTGAAAAAAGATGTTAATTTTACCGTTAACTGCTTC 50169 36 100.0 36 .................................... ATAACTAATGTTCTATCAAACGTATATTCAATTAAA 50241 36 100.0 42 .................................... TCTAACAGGAACTAAATCAAGGACGTATTTCCTACCACCCAA 50319 36 100.0 41 .................................... GTATATCCGCCGAAACTATAACGGGGTTAAGTTCTAATACC 50396 36 100.0 46 .................................... GATCTAATGTATTTCATGGTTGTCCTCTAATAGAATAAGTAATTAG 50478 36 100.0 35 .................................... CTAAGAATAGACTGAATATTGTTTTCATGTTTACA 50549 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================== ================== 17 36 99.8 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAAAGAGATTGGTAGGGTTGTAACTTTGGAGGAGGGTTGTTTAATGGGTGGTTTTGGTTCTGCTGTGGCGGAAGCTTTACTTGATGCTGATATTGTTGTACCTGTGAAGCGGATTGGTGTTCCTGATATTTTGGTAGATCATGCTACACCGGATCAATCTTTTGCTGCATTAGGTTTAAGTAGTCCTCAAATTGCCGAAACTGTTTTACAGGCTTTCTTTAGAAAACAGGTTGCTGCTATGGTGTAGTTTTTGTCTGAATGAGGATTTGCAGCGATACAGGATTTAATTATTTTGTATATGTTTGCTGGTCTTGTTTATTTTCCGAAGTTCAGGTAAAATGGCTGTAATATTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGAGTTTTTTTCTTGCTGTCGGTTGGTGGTTTTACTACTTTTTTCCTGACCCTCGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : CAAAAGCACAGATAGTATATTTCCCTGGTCTAATCAAGTACATACCAACTTGTTTCCTGTTCCCTAAAACTAAAAAACCTTATACCTCAAGAACATGAACCAAAAAACCCTTAAAAATCAACAAACCCACAATACCTAGCCACCAAACCAGCTAAAACTTGCAAATCTATCGGTTTAGAAATATACTCATTAACACCAGCAGCCAAACAAATTTCTCGATCTTCCTTCATCGCCCTTGCAGTTTGAGCAATAATCCCTATATGCTGATATTTAGGGTTTTCTCGTAATTGCTGCACCAAAATTAAACCATTAATATCAGGTAAACTCACATCCATTAAAATCACTCTTGGTTCTATTTCCCGCAGACTATTCCACATTTCCACCCCATTTTTTACCCAAATTACCTGATACCCCAATCTTCTTAAATAAATCCCCATTAATTCCCCATTTGCTAAGTCATCTTCCACTAGTAAAACTACTGGTGATAAAGTCATATTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6337-10461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSS010000066.1 Aphanizomenon sp. FACHB-1401 contig66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================== ================== 6337 37 100.0 37 ..................................... CCTGCTTGGAAAAATAAATTTCCTTTTGATATGATTT 6411 37 100.0 35 ..................................... AAAAAAGGAATTCTCGATAATCAGAAGCTAAAAGC 6483 37 100.0 35 ..................................... ACAATATGGTGGCATGTCTTCCATTTGTTGTGCAG 6555 37 100.0 35 ..................................... TGTCCACAAAACCCCACAAATTCTTCAATCCCAAA 6627 37 100.0 35 ..................................... TACAGCCAAATTATTTGTTAGAACTGCATAATGGA 6699 37 100.0 33 ..................................... TATTAAAGTCAACAGCAGATAACAAAGAAATTT 6769 37 100.0 36 ..................................... GGAGGCTAAGATGCACTGCCAAGCACTAAACAGGAA 6842 37 100.0 33 ..................................... ACTTGATGGACTCTGAGAAATTTAGAATAGGAT 6912 37 100.0 37 ..................................... TAATTAAGGATGCGATCGCCTCTATCCAAGAGGCTTT 6986 37 100.0 36 ..................................... ATTTCTTTAGAATTTATGGTACAGGATTAGCTAATA 7059 37 100.0 35 ..................................... CGAAAAACCAGCTAAGTACAGGGTCAAGCAGGGGA 7131 37 100.0 38 ..................................... AATTGACTGAACTTTGTAGCTTTCTGAATTTTCAGCAG 7206 37 100.0 40 ..................................... GGCCGAAAATTATAGCAGATATTAGAAGAATGAATAAAAA 7283 37 100.0 34 ..................................... GTCCCGTGAGCAATTCCCGCGTCTTTTGAGAGTA 7354 37 100.0 40 ..................................... CAAAGCTTCATTTAAATTCCTTAGGCTTTGCTCACCGCAA 7431 37 100.0 36 ..................................... TTGCTACAGGCTTCCTTATGTTGGGTGTGGTTCTTT 7504 37 100.0 33 ..................................... CTTATTTAAGTAATGAGTATATTGGCCATTTTT 7574 37 100.0 31 ..................................... ACAGGTAAGTCTGCACCACCTTCTGGTGGGA 7642 37 100.0 35 ..................................... GCAATATTATCCAGAGATCCAGCAAGAAATGAAAA 7714 37 100.0 40 ..................................... ATCAAAAATCAAATCCAAGCTTGCTTACGGGCGATTGCAA 7791 37 100.0 31 ..................................... GGCAAACCTAATAATTTATGCGGGTAAAAAC 7859 37 100.0 39 ..................................... AAAAAAAGTAAAAAGTAAAAAAGAGGTAAGGAAAATGCA 7935 37 100.0 34 ..................................... GGTAGCATAAATTTCTAGACCTCTATAAGAACCA 8006 37 100.0 37 ..................................... AGAGAACAAAACGATATTATGAAAGCAGCGAAGGAAT 8080 37 100.0 36 ..................................... CTACGGTGAATTTTTGGGGTAAAGACAGAGAGATTT 8153 37 100.0 36 ..................................... CGACATATGAAAAGTATTTTACTTTGCATATCTCAA 8226 37 100.0 36 ..................................... TCGAACAAGATAAATATGCTTCTTGGATTTCAAATC 8299 37 100.0 33 ..................................... TTACTTTTTTTTCTAATTCTGCTGCATTCGCCT 8369 37 100.0 38 ..................................... ACAAGAAAATGTAAAGGAGAAAAGCGATTCTGTTGTTG 8444 37 100.0 35 ..................................... TAAACTGCCTGAAAATACTTATCATTTTAGTAGGC 8516 37 100.0 35 ..................................... CTGCTATTTTTGTTGCTTCTAAGGCTGAAGATAAA 8588 37 100.0 35 ..................................... TTACCAGAGATTGGGAAGAAAACTTCTGATTTAAG 8660 37 100.0 35 ..................................... AGTGCGGAGATTAACGCTACCATGACCCGGCTGGG 8732 37 100.0 35 ..................................... GGGATACACCCTTATTAGGAGCGCTTACCACTGGG 8804 37 100.0 34 ..................................... GGCATTTAGACCTGAAGAAATGACAGAAGAACAT 8875 37 100.0 32 ..................................... CAAATCTGAAAATTTTCAGGGGTGAAAAAATA 8944 37 100.0 36 ..................................... TTTTCTCGAAAAGATGGTAAAAGAATGAAAATGGAA 9017 37 100.0 34 ..................................... AAGAGGGTGGCAAGATGGCATGGATACCTGCAAA 9088 37 100.0 34 ..................................... GAATAAAGTTCGAGGGCAAGGTTAGAGCCCAAAG 9159 37 100.0 40 ..................................... GAAAAATGAGATTTACTACTACCAGGTTTACCGTATACTG 9236 37 100.0 37 ..................................... CAATATACCGACAGACTAAATTTTTAGAGAGCCAATC 9310 37 100.0 34 ..................................... GTTAAATACGCGATCGCTAATTATGACTCTGAAA 9381 37 100.0 36 ..................................... AGATTGTGATTGAACAAATTACCGCAGATGTTTCTA 9454 37 100.0 39 ..................................... TTGAATTTCGCTACTGAAGCTATTAACAAACATTTTGGT 9530 37 100.0 37 ..................................... GTAATTATCTTTTTTCTGTTTATATTTTTGTACCATT 9604 37 100.0 36 ..................................... CGGCATCGAAAGCAATATCTTATTTGTGTGGCGCAA 9677 37 100.0 41 ..................................... TTCCGTCACCGTCAAAGTCGCCACCGCAGTCCTGAGAACCA 9755 37 100.0 38 ..................................... TTAATTCTTCTACGCAAGAGCGATCGCGCATTAACCAG 9830 37 100.0 34 ..................................... AATTCAAAGGATGATCTAATTTCTGGCAAAAGGC 9901 37 100.0 35 ..................................... GAAAGATGGACCAGCTTCGCTGCCGGGATCTTTAA 9973 37 100.0 38 ..................................... TTTTTGTTTCTTTTTACCATTTTAAATCTTTTCTTCCG 10048 37 100.0 35 ..................................... TTCTACTAATCCAGAAGAAAATAAAATGTTCCGCG 10120 37 100.0 34 ..................................... AAGTAAATCAAGTTTTTTAAGTTTAGGAGTAATT 10191 37 100.0 31 ..................................... AACTTGTTATGCTAACCGATATGCCACTTTT 10259 37 100.0 33 ..................................... ATAGTTTTTATGATATTATGGAAAAAATCCCAA 10329 37 100.0 59 ..................................... ATTGAGGATTTAAATATTGAGGATTGAAACGAATTACAATAAATCAAATCAAGCAGATT 10425 37 91.9 0 .............A.....A............C.... | ========== ====== ====== ====== ===================================== =========================================================== ================== 57 37 99.9 36 GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGACTGAACGTGATTTAGAATTGTTTTGGGAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGATTATATGTATTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTACATAAGTTGTTTGATAAGCTGCAAATTAAGTCTAATGTTGATGTACCCCGTAGTTTTGCTGATTATCAGGTGGTGCTTGATGATGAATTTAAACTACCTGATGGTGTGATTTTGACAAGGTTGGATTAAAAATGCGCGGATGGTTAGGTGTTAAGTCGGAATGAGTATGATTAAGCTGGAAACTCTTGCAATGTATGGATTTCAGGACATGGGTAATTTAAAATGCCCGCGCACCTTATGCTGTAAGGGTTACAGCGTTTTTTGCTCTTGCTCTTGGGACTGGAATGGGGTATTATCTGAACACCCGCGCAAATCATTCTGGAAATCTCCTATTTCCAAGGGTTTCCCCGGCCCGCT # Right flank : CAAAATCATGTTTTATCTAAATACCCCCGTCCCTGACAATGATCATACCCCACCAACTCGACGGGGAAAGCATAAAATATTCATTGGAATGGCTCCCGGAGTCGGGAAAACATACAGAATGCTAGAAGAAGCACACCAACTTAAACAAGAAGGTATTGATATTGTAATTGGTGTTTTAGAAACCCATGGACGTAAAGGTACGGCCACAAAAGCCATAGGATTAGAGATAATTCCTAAAAAAACCATTGTTCACAAAAATATCAACCTTCAAGAAATGGACACCGAAGGAATTTTAAAACGCTCCCCTCAACTGGTTTTAATTGATGAATTAGCCCATACAAATACCCCCGGTTCACTTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAGTATAGATGTTTACTCTACAGTCAACATTCAACATTTAGAAAGTTTGAACGATTTAGTAGCAGGAATTACAGGTATCGTAGTCCGAGAACGAATTCCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 118056-112849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSS010000007.1 Aphanizomenon sp. FACHB-1401 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 118055 37 94.6 41 ...................................TG TGGCTATTTGTGGGGTGAAAAACCCAATATTTCTGCACTAA 117977 37 94.6 37 ...................................TG TTCCTTATGCCTTCTGATTTTTCTTAACTAATGAAGA 117903 37 94.6 34 ...................................TA AAAATTCTCCGGATCTAGGTTCTCCAGATTCATA 117832 37 94.6 35 ...................................TT GGGATAACAGGCGCGGGTTATGCACCAGCCTGGGA 117760 37 94.6 39 ...................................TT TGATGTGATGTATTCCACCCCGCGGCATACATATCAAGA 117684 37 100.0 36 ..................................... TTCTGATACTTGCGGATTTGGTGAGGCGATCGCAAA 117611 37 100.0 38 ..................................... ATTAAACAAATAAAGTAAATCTAGATTAGATTTCAAGA 117536 37 100.0 36 ..................................... CCCTGAGTCGTAACCAGCGCCGAATTGGTTCGCCAA 117463 37 100.0 43 ..................................... TACTTTTACATTTCTATATTCGACTACGGTGTTGACGGTGGTA 117383 37 100.0 40 ..................................... AGCCATTTGTTGTTCTTCTATGGCATGAAGTTGATCAAGA 117306 37 100.0 40 ..................................... GGGTATGGCGGTGAACGATGCCAGGGAGAGCGATCGCACA 117229 37 100.0 35 ..................................... ATTCATGCTTATCAATCAGTGGGTAAAGTCGTAGA 117157 37 100.0 35 ..................................... AAAATGGGCGAAACTCGAGTGATAGGGGAAATGGA 117085 37 100.0 40 ..................................... CAATTAGGGTGGATCTTTTTTACCCAGTCCAAGGCGTTAA 117008 37 100.0 33 ..................................... CCTATCAATGAAATAATCGTCAATGCAGTCTTA 116938 37 100.0 37 ..................................... ATCCCCAGTCGGAAAAGCAAATTCTTTCCCACTGATA 116864 37 100.0 43 ..................................... TTCAATCAAGATGACCTAGAAAGTCCGCGGACTGAAAGGGGAA 116784 37 100.0 38 ..................................... AGTAAACGGTTTTAAGTGGCTGCAACTAGACCGCGCAA 116709 37 100.0 38 ..................................... AAAAAGTAAAAAGTAAGTAAGGAAAGGCAAGGAAGATA 116634 37 100.0 39 ..................................... AGTGCTAAGGGGAAGGCTTTAAATTCCCAACTTTCCTCA 116558 37 100.0 36 ..................................... TAAAAGCTTTTGGCAAGAGAGGTTAAGAGCTTACGA 116485 37 100.0 35 ..................................... TAGCCGGGAGTTATAGAGGGATGGAAATTTACGCA 116413 37 100.0 36 ..................................... TACTAGACTATAAATATAGGGTAAAGCAAAGGAAAA 116340 37 100.0 36 ..................................... AGACGCTTTTTCCAGAACTTCTAATCGTGTTGTAAA 116267 37 100.0 38 ..................................... TTCTCAAGATTGTATCTTGTCGCGCTTGATATATTTAA 116192 37 100.0 41 ..................................... TTCAGTATTTCTGTTTCGATGTGGGCTAATTCCTTCTCAGA 116114 37 100.0 38 ..................................... GAATACTTCAATATCCCCTAACTCAGTTTCTATTGTTA 116039 37 100.0 35 ..................................... ACTGCCAAGGAACTTTTAATTAAAAAATTAGAAGA 115967 37 100.0 37 ..................................... ACTAAACTCATTATCGTATTGTGGAAAGCCTAAACTA 115893 37 100.0 36 ..................................... AAATGGGAATTAACTAAATCCAAAAAAATAGAAAGA 115820 37 100.0 35 ..................................... AAGATCCAGTTAAGCCTAACCTTAAACCTACCGAA 115748 37 100.0 36 ..................................... TTTTAATGTGGCTTAAGCAAATAGGAGTTTTAAAGA 115675 37 100.0 38 ..................................... ATTGCCTATAGCTGAACTGTATGAATACACAATGGGCA 115600 37 100.0 36 ..................................... TAAGTTAAGCTTAACCGATACCCGAAAAGCTAAATA 115527 37 100.0 35 ..................................... CCTGATACATGATGCCAGGCATAATTATAATCTTA 115455 37 100.0 37 ..................................... CCCTTGAAATAACCCAAAGCCTTAAATAACTTTTCTA 115381 37 100.0 40 ..................................... CCAAGAGCCGCCCCAGCAACACATTCCAGTAAAATCTCAA 115304 37 100.0 34 ..................................... AAGAATAAAGTGTCCTTATATTTTTACAAAAAAA 115233 37 100.0 34 ..................................... TACAATCTATTAATGATTTAAAATCCAATTTAGT 115162 37 100.0 39 ..................................... CAGGTATTGTAGAATCTATGCAAGCAGCTAAATGATTGA 115086 37 100.0 38 ..................................... TTTGTGGCTGCCAAGGCCGAAGAAAAAGACGGTGATAA 115011 37 100.0 36 ..................................... AGAGATAGTAGCCCGTAATTCATTGACGGGACAATT 114938 37 100.0 37 ..................................... AAAGAGATTGTTACTGATGTTCCCTCACCATCATAAG 114864 37 100.0 35 ..................................... TATGCCAACATATTCTGATATTTTCGATAACAACA 114792 37 100.0 38 ..................................... ATAGATAAAATTCTGTTAGTTGAGGAATAAGATGCAGA 114717 37 100.0 36 ..................................... TTCACATGGCAGAAGTTCCCGATCTAACAAAAGCCG 114644 37 100.0 37 ..................................... CAGTATTTTTTATAGACCCCAAGGATGATCCCAAAGA 114570 37 100.0 41 ..................................... ACTTCCCTGACATCTACATTTACACTTTAACAAGTTCACAG 114492 37 100.0 35 ..................................... CAATCAGCAAGCTCAAACTGATCTAAAACTAAAAA 114420 37 100.0 33 ..................................... TATTTAGTTGCCCAAGAAGTTTCAATAGCGGGG 114350 37 100.0 33 ..................................... TAATAATTTGTGAGGTAATCCCCACAAGATTTC 114280 37 100.0 38 ..................................... TTAGAAAATTACGACAATAACCCAGACTTACTGGAGAA 114205 37 100.0 33 ..................................... CCTGCTTTACCTCTAATTTTTCTAACTGCGCTT 114135 37 100.0 35 ..................................... TAAAATCCTTAAACTTAAGTTGCGATCGCAAGATA 114063 37 100.0 38 ..................................... TTAATTACTTAAAGTAGCTTAAAAACCTTTCAACACTT 113988 37 100.0 36 ..................................... ATCGGGAAAGCTTACCGACTCAAACCCCATATTAAA 113915 37 100.0 35 ..................................... GTACAAGTCCCGTTACCATTAGGCTTATCATAATT 113843 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 113766 37 100.0 34 ..................................... ACTCCTGTCCAGCAGCAGAGTTTTTTCAGCTCTG 113695 37 100.0 34 ..................................... ACTATTAAGTTAGTCAGCAAAAATGACAAGTTTA 113624 37 100.0 39 ..................................... TGAATATCAACAGTATTAAAGATGCGATCGCTCCAAATA 113548 37 97.3 37 ........................A............ TAGCCTGAATCACTTTAAATACCTGTTGAATAAAGTC 113474 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 113397 37 100.0 37 ..................................... TACCTATTGGAGATTGTAGAAATTTTTGGGAGTGGGT 113323 37 100.0 36 ..................................... AATTTGATTACGTTTTAGCACGTTGTAAATATTTGC 113250 37 100.0 41 ..................................... TCACAAAAAGTATTCTGAACATCCGCCACAAATAAAGGCAC 113172 37 100.0 37 ..................................... GAAGCGGCTATGAATTTGTTAATGGGTGAAGGTTATG 113098 37 100.0 34 ..................................... AATTCAGTAATTCATCAAGATTTTTACTCATGTT 113027 37 100.0 34 ..................................... AGCGCAAATAATCTGACCTGACAACGGATAACTT 112956 37 100.0 34 ..................................... ATTTTTATGAAACTACACCTGGCCACCAAAATGA 112885 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 71 37 99.6 37 ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTTTCTTACGATATTTCTGAGGACAAACGCCGGACGAAAATCCATAGTATTCTCAAGTCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAACTAAGATCGCGTCTTAATAAGCTGATTAAACCGGAAACTGACAGTGTTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGATAGAAAGGGTCGGCGGTGAACAACCCCGTGATCAGACGATTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAATATCTAGGTCTGGAAAAAATGTCTGAAATCATCTCTGTACAAGACTTTGAGCAATTTATGGCGGTTCACCCACCCGCGCCCTTTGCCCAGTATGGGTTTCACGGATTTTACCCCTTGACACTTTTTCGGAAATGGTTTATTATGAGTTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCGAGTCCCCGCCA # Right flank : AAAATTAATTTTTACCCAGATAGATTAAACCCTGTGCTATTAAGTCTCCTAAATTAGTTAGCTTTTATTGTAGTTTTAGTTGCTATATATGTCGCTAAATCTGCTCAAAAATCTGAATCGCAAAAATAATTGCCTAATTGCCAAATCCAGATGAAATATTAATAAATTGCCAAGAACCTTATGTAGTCTTAAAATTCCTTTAGGGACAGAAAAGAAGTCTTGGGAGATTTTACCTTTTATTACTTATCTTCCTGCATACTCCTGACAATTTTTGTGACCATTTTTCTAGGAATAAACCGCACACATTTTGACATAATCTTATTCATAAACCCAGGAATAACAATTATTTTTCCCTGAATTAGGGCATTATAACCAATTTGGGCAACAGTTTCGGCATCCATCATATTTTTACCTTTCAGCATTTTAGAATCAGCCATTCCTGTTCTTTCATGAAATGCTGATGCTGTAGAACCTGGACAAAGAACTGTGACGGTGACACC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //