Array 1 21620-23845 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSH01000007.1 Bacillus xiamenensis strain HYC-10 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21620 32 96.9 34 .....................C.......... AAATAATTTAAGTAATAATTAGGAATATTTCATT 21686 32 87.5 34 ....A......A..C.C............... AAATCATTGCAGTAATCATTAGGAATATTTGCTT 21752 32 100.0 34 ................................ AAATCATTTAAGTCCTCATTAGGAATATTTCCTT 21818 32 96.9 34 ...........................T.... AAATCATTTAAGTCCTCATTAGGAATAGTTCCTT 21884 32 96.9 34 ...........................T.... AAATCATTTAAGTCCTCATTAGGAATAGTTCCTT 21950 32 100.0 36 ................................ ATTTGAGCATCAATACCTTGTATATTGAAAACGCTT 22018 32 96.9 34 ............................G... AAATCATTTAAGTCCTCATTAGTAATATTTCCTT 22084 32 96.9 34 ............................G... AAATCATTTAAGTCCTCATTAGGAATAGTTCCTT 22150 32 96.9 36 .......................C........ ATTTGAGCATCAATCCCTTGTATATTGAAAACGCTT 22218 32 100.0 33 ................................ GATTCGCCACTGAATACAATCCGTGTTTGATTT 22283 32 100.0 34 ................................ TTTAGCTTTGGAGAAAGCGAAGGCAGTAGGCACT 22349 32 96.9 34 ...................T............ ACTCTCCTTTTTTGGCAAAAATAAAAAGACCCTA 22415 32 100.0 34 ................................ ACTCTCCTTTTTTGGCAAAAATAAAAAGACCCTA 22481 32 96.9 33 .............................C.. TAAAGCAGATTATTGCAGTCGTTAGTTCCTTTC 22546 32 93.8 34 .....G...................G...... TTTAGCTTTGGAGCAAGCGAAGGCAGTAGGCAAT 22612 32 100.0 34 ................................ TTTAGCTTTGGAGAAAGCGAAGGCAGTAGGCAAT 22678 32 100.0 33 ................................ TAAAGCAGATTATCGCAGTCGTTAGTTCCTTTC 22743 32 93.8 34 .....G...................G...... TTTAGCTTTGGAGCAAGCGAAGGCAGTAGGCAAT 22809 32 100.0 33 ................................ TAAAGCAGATTATTGCAGTCGTTAGTTCCTTTC 22874 32 100.0 33 ................................ TAAAGCAGATTATTGCAGTCGTTAGTTCCTTTC 22939 32 96.9 35 .................G.............. TGTGATGAGTATAGCCAGCAAAGAAACAGTCTTCG 23006 32 100.0 35 ................................ TGTGATGAGTATAGCCAGCAAAGAAACAGTCTTCG 23073 32 100.0 36 ................................ GTAAGTGCTCCTTACTTGGAGGCTGACCAAAATACG 23141 31 90.6 35 ..A...-....................T.... TGTGATGAGTATAGCCAGCAAAGAAACAGTCTTCG A [23145] 23208 32 100.0 36 ................................ GTAAGTCCTCCTTACTTGGAGGCTGACCAAAATACG 23276 32 100.0 36 ................................ GTAAGTCCTCCTTGCTTGGAGGCTGACCAAAATACG 23344 32 96.9 36 ................T............... TGTCATGACCACGCCTTTATATTCAAGTCTAGTCTC 23412 32 96.9 36 T............................... TGTCATGACCACGCCTTTATATTCAAGGCTAGTCGC 23480 32 100.0 35 ................................ CTTTTTAGTAATAGTACCTTTGACATAATCATGAT 23547 32 93.8 36 ........A..A.................... TGTCATGACCACGCCTTTATATTCAAGGCTAGTCGC 23615 32 100.0 35 ................................ CTTTTTAGTAATAGTACCTTTGACATAATACTGAT 23682 32 100.0 35 ................................ CTTTTTAGTAATAGTACCTATGACATAATACTGAT 23749 32 100.0 34 ................................ TTTCAGCATCCACCTTTGGTGTTATGTTTGATGC 23815 31 84.4 0 ...................-TA....C....G | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 97.3 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CATTTCTTTGGAAGTAGGGGATGTTTGATATGATGGTTGTGGTTACATATGATATCAGCACAATTGATAGAGCTGGGCAACGAAGACTTAGGAAAATATCGAAAATTTGTCAAAATTATGGCCAAAGAGTACAACATTCTGTTTTTGAATGTATTATAGATTCAACGGAGTTTGCTACAATGAAGCATCAGTTGTTGCAAGCTATCAACGAAGAAAAAGATAGCATTCGTTTTTACCAAATAGGTAACCAATATCGAAAAAAAGTAGAACAAGTTGGGGTAAAAGAAACAATTTTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGGGGTGCACATAAATTCCCTGAAGCATTCGCACCTAAAAAGAAAGATTTTTCGACAAAATCTATCTCCTTATGTCTCATTAATTGATACTTTGTACAAATAGATGTGTCTTTTTTAACTGATTTACTTAAAAAGAAGCTGTTTTATTTTGTTTTTTTATTGAAAATCGCC # Right flank : GTCTAACTTACTATTTATGTTGAATTTTTAATTTGATGCTAAATTATCAACCTATGTAAAAAAATAGTAAGTTTGCAATGGGAAAGAAAAGAGGTAATTGAATACTTATTGAATATTTGCTGGAATAAATGTATGTAAAGGAAAGGAGTGTTTCAGTGGTATTGATGAGGTTGATCAGCCTATATATGTTGACAGCGGTTGGTTTGGGATGGGTGATAAACTATTTTCCAGGTTTGATGCTGCCCATCTATATTCTTGCGATAATTGGGCTTTTGTTCTGTCTCGGTCATATTGCGCTCCATTATATTCAGAGAATCAGCATGTTGCTTGATAAAAAATAGTTGAAATGGAAGTCATAAAGATTGTATCTCTCGAATCTAATACCCCCACTATATGAAGGAGGTTTGTTTATTTTTTGATGATCTAGGTGCTGGATGATTTTCTTATTTGATTCTTTAATTTGTCTCAAAAGGGAGACGATATTGCCCGTAAACCCTATG # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:-3, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8433-9003 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSH01000057.1 Bacillus xiamenensis strain HYC-10 contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8433 32 100.0 36 ................................ TTTTTTCGGCGGTAAAGTATGTTGGGTGTACTTGAC 8501 32 100.0 36 ................................ TTTTTTCGGCGGTAAAGTATGTTGGGTGTACTTGAC 8569 32 100.0 36 ................................ TTTTTTCGGCGGTAAAGTATGTTGGGTGTACTTGAC 8637 32 100.0 33 ................................ TTTGGTCTGATATTTTAAACATGTGAGATGCCC 8702 32 100.0 36 ................................ ATATCCATTGCGCTCCGCTTCGTCCTTCCAGTAGTC 8770 32 96.9 35 .....................A.......... TTTGTAATAACCGTCACCGCGACACCAGCCATAAT 8837 32 96.9 34 .......................A........ AAAACATAGTTTTTAGCAACTCGTTTCGCATTAG 8903 31 96.9 36 ...............................- TATTGACGCTGTACTTTCATATAGGCTGTCATATTC A [8915] 8971 32 87.5 0 ....A........A.....GA........... | A [8999] ========== ====== ====== ====== ================================ ==================================== ================== 9 32 97.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATCGCTGATCGGCTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAAAGAAGACAAAATCACCAATGGAGAAATGGAAAAACTCATTGAAACCTTTACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTGATCGAAAAAGTAGACTGGCTGATTTATCAAGAAGTACCCGGCTTTTGGGAATTTATTGTGGATTATCTAACGAAGTTGTAAAAGAGGCTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGAGCATTCGCACCTGTTTATTCGACAAAATTGAGAAAAAATGTATGTTTTATGAAAGGGAAAACAAAATTCTTTATTGAAATTTGTGGATTTTGCCTATCATTCCCTAAAAAATGTTACAATTAGGGCGAAAATCGCA # Right flank : TTTGAATTGGCAGCATCATAGACCAAGCACCCCCGGACTGGCCCAGTAGTCCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACGAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAATCAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGTACTCTACATGAGTGCGTGGATTGAAATGTGATCGGCACGAGACCCACGTGCATATGGGGTGTTCGCACTCTATATGAGTGCGAGGATTGAAATATCAATTTATCATCAAAGCTGCCAGACCTTACTGCAGTCGTACTCTACATGAGTGCGTGGATTGAAATGTGATCGGCACGAGA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10276-11166 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSH01000057.1 Bacillus xiamenensis strain HYC-10 contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10276 32 100.0 34 ................................ TTTTAGAATCTCCTCAACAGGTTGCTGAAATCTA 10342 32 100.0 34 ................................ TTTTAGAATCTCCTCAACAGGTTGCTGAAATCTA 10408 32 100.0 34 ................................ TTTTAGAATCTCCTCAACAGGTTGCTGAAATCTA 10474 32 100.0 34 ................................ CTCATCACTGGAGGTACGCTCATCCAGCAGACAT 10540 32 96.9 34 .....................A.......... ATCATCATTGGAGGTACGCTCATCCCGCAGACAT 10606 32 100.0 34 ................................ ATCATCACTGGAGGTACGCTCATCCCGCAGACAT 10672 32 100.0 35 ................................ GGACCTTGAGGGCCTTGTTCACCAGGATCACCCTT 10739 32 100.0 35 ................................ GGACCTTGAGGGCCTTGTTCACCAGGATCACCCTT 10806 32 90.6 34 .....C.......GT................. TTAGGAAGCACAGTAGCTGAGTTAGATAAAAATA 10872 32 100.0 34 ................................ TTAGGAATCACAGTAGATGAGTTAGATAAAAATA 10938 32 100.0 34 ................................ TTAGGAATCACAGTAGATGAGTTAGATAAAAATA 11004 32 100.0 34 ................................ TTAGGAATCACAGTAGATGAGTTAGATAAAAATA 11070 32 100.0 34 ................................ CTTTAATCGTTTCAATGATTGTGTGACCGTGTTC 11136 31 84.4 0 ...........A.......T.-A........C | ========== ====== ====== ====== ================================ =================================== ================== 14 32 98.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACTGCAGTAACAGTCGCACTCTACATGAGTGTGTGAATTGAAATATATGATCTAGCGTTAATTTTTGTGTGGTCATGTCGCACTCTATATGGGTGCGTGGATTGAAATTCTGTGGTGTTGGGTATTTTTTGTAGTGTTCTTCGGTCGCACTCTACATGAGTGCTTAGCCATTCTTGATTTTAGGTAAGAGAAAACATAGTTAAAGTTAAAGCATGTATGTTTGATCGGAAATTATTAGTGGAGTAACTATACTGATTAAAATTTACTTTTCCTCAAAGATCGGGAGAAGAGTAGTCATTTTAGTTAATAGAGTCAATGAATTAAAAACTTGGTGCGAATGTGAGGTGATCATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : CCCTCATCAGTAGGTAGCTAGAAATATATATTGACAATTGTGCTTGATATAGGTGTGAAAAAACATGACTGACTCAATAGTCATGTTTTTTATGAATTCAAAGCTGTTGATGAAACACTGAAATAAGTATAATTATCAAGAGTAATAGTTGTTAATTAAAATTAAATAGGATTAAAAAAAATTCGGTGCGAATGTGGGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGCATATTTTCTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTTCCCAAAAAATGTTACAATTAGGGTGGAAATCGCAGTCGCGCTCTACATGAGTGCGTGGATTGAAATCCACCAAATGCAATTGCCAGTGTAAACGTAATAAGTCGCGCTCTCAATGAGTGCGTGGATTTAAATCCACCAAATGCAACTGCCAATGTAAACGTAATAAGTCGCGCTCTACAT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:-3, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19999-20826 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSH01000057.1 Bacillus xiamenensis strain HYC-10 contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19999 32 96.9 35 ..............................G. ATAGACGCACCTAACTTGTTGTAGGTATAAAGGAT 20066 32 93.8 34 ........A..........A............ TTTTTCTGGGTCTACTTTGGTTTCCTGCTCCAGA 20132 32 100.0 34 ................................ TTTTTCTGGGTCTATTTTGGTTTCCTGCTCCAGA 20198 32 96.9 35 ...............................C AAAGAAGCACCTAAATTGTTGTATGTATAAAGGAT 20265 32 93.8 34 ........A..........A............ TTTTTCTGGGTCTATTTTGGTTTCCTGCTCCAGA 20331 32 100.0 35 ................................ AAAGAAGCACCTAACTTGTTGTATGTATAAAGGAT 20398 32 100.0 35 ................................ AAAGAAGAACCTAACTTGTTGTATTTATAAAGTAT 20465 32 96.9 35 ................T............... AAAGAAGAACCTAACTTGTTGTATTTATAAAGTAT 20532 32 100.0 35 ................................ GTCGTTAACGGTAAATCTTTTACAGATCCAATGGC 20599 32 100.0 33 ................................ ATGAAATCAGCCCTTCTTTGAAAGGGCTATTTT 20664 32 100.0 34 ................................ TCAAAATCTCCTATATGCTCATCATGTGATGCTG 20730 32 84.4 33 ......G....T......A.A..T........ AATCGTGTTAAGTAGATTAAATCTATTAATTAT 20795 32 71.9 0 ........TG.T.....CAT...A...A.G.. | ========== ====== ====== ====== ================================ =================================== ================== 13 32 95.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACAGTAAAGGGAGCATTCAAAGTAGATGTCATGACACCACATCATTCAGACTACAACAGCGTTAAGCTAGATAAGATGAATCGAAGGAGAAGTGTTCCAGCTCCTCGAGACGATGACTCACCGACACCCATTCATTTCTTAACGGTGGTCAATGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAACGGAATGGCTCGAACTGGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTGAAATAGACGACGTCATTTCATAAGACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGAAACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTTTAGGGGCTAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTACAATTAAGGCGAAAATCGCC # Right flank : TCATCGTCAATAGGTAGCTAAAAAGGAATATTAACAATTCCGCATGTTATAAGTGTTAAAAACATAACGCTGTCTCCTGACTAAGTAGTCATGTTTTTAATTGAATTCAAAGTTGTTGCTGAAATAAGTATGATGATCAAGATTTAACAGGTTTTAATTAATTAGATTCAGGCTGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTGTGTAGAGGAAAACAAAATTTGAATGAGAATATTGGTGATTTTGGCTGTGATTACCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGATGGCGTGGATTGAAATCTGGAATCCCTGCGTAAATGTCGTTTGCTGTAAAGTCGCACTCTACATGAGTGCGTGGATTGAAATCTCGCATCGCTGCGTAAATGCCGTCTCCTTTAAAGTAGCACTCTACATG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:-3, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTATACATGAGTGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 21179-22003 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSH01000057.1 Bacillus xiamenensis strain HYC-10 contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 21179 32 93.8 34 ................TG.............. CTGGAATCCCTGCGTAAATGTCGTTTGCTGTAAA 21245 32 100.0 34 ................................ CTCGCATCGCTGCGTAAATGCCGTCTCCTTTAAA 21311 32 96.9 34 ..A............................. CTGGCATCGCTGCGTAAATGTCGTTTGCTTTAAA 21377 32 100.0 34 ................................ CTGGAATCCCTGCGTAAATGTCGTTTGCTTTAAA 21443 32 96.9 34 ..A............................. CTGGCATCGCGGCGTAAATGTCGTTTGCTTTAAA 21509 32 100.0 35 ................................ TTTACGAGCATATTTTTCAAAGACGTGACGCATCC 21576 32 96.9 33 ..A............................. TGTCGATCCTGATTGTTTTGAGGGTGTCAACCT 21641 32 100.0 35 ................................ TTTACGAGCATATTTTTCAAAGACGTGACGCATCC 21708 32 96.9 33 ..A............................. TGTCGATCCTGATTGTTTTGAGGGTGTCAACCT 21773 32 100.0 35 ................................ ATAAAGGAATTAACTATTTTATTTGCCTGCCACGT 21840 32 100.0 35 ................................ ATAAAGGAATTAACTATTTTATTTGCCTGCCACGT 21907 32 100.0 35 ................................ ATAAAGGAATTAACTATTTTATTTGCCTGCCACGT 21974 30 93.8 0 ..............................-- | ========== ====== ====== ====== ================================ =================================== ================== 13 32 98.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AGTGCGTGGATTGAAATTCAAAATCTCCTATATGCTCATCATGTGATGCTGGTCGCAGTCTATATGAGTACATGTATTGAAATAATCGTGTTAAGTAGATTAAATCTATTAATTATGTCGCACTTGATATGAGCATGTGAATTAAGATCATCGTCAATAGGTAGCTAAAAAGGAATATTAACAATTCCGCATGTTATAAGTGTTAAAAACATAACGCTGTCTCCTGACTAAGTAGTCATGTTTTTAATTGAATTCAAAGTTGTTGCTGAAATAAGTATGATGATCAAGATTTAACAGGTTTTAATTAATTAGATTCAGGCTGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTGTGTAGAGGAAAACAAAATTTGAATGAGAATATTGGTGATTTTGGCTGTGATTACCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : | # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:-3, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTAGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //