Array 1 25120-26346 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDV02000054.1 Pseudomonas aeruginosa strain PABL018 NODE_54_length_35871_cov_70.4297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25120 28 100.0 32 ............................ ATTTGCCCTAGCACTAATAACACAATAAAAAG 25180 28 100.0 33 ............................ CTCGCGGTGGTACTGGCGGTGCAAACATTCCTG 25241 28 100.0 32 ............................ TTGCTGCGAAATGGAGCCAACGCAAGCATAGT 25301 28 100.0 32 ............................ CACACCATCGGCTCTTTAGCCGGTTTCTTCGA 25361 28 100.0 32 ............................ TGCACGTCGGCGACGTTGGCCATACCCTGATT 25421 28 100.0 32 ............................ TTTGTTCCGGCAGGCAACGTAGTAGCGCTTGT 25481 28 100.0 32 ............................ CATGTCTCTGTCGTGATGTCCTGCGAGCCAAA 25541 28 100.0 32 ............................ TTGGTGATGGAGTCCTTCGAGCGGGAGATCGC 25601 28 100.0 32 ............................ TTCGTGACGGCCCGTAGAAACCCGCTGCTGGG 25661 28 100.0 32 ............................ AAGCAGCCTGGATGCCCGGCCCAGGTCAGCAA 25721 28 100.0 32 ............................ TGGACGCGCTGGTTGATGTTGCCCGCCGTCCC 25781 28 100.0 32 ............................ GAGCAGGTTCTGTTCTGCCGCGAACTGGCCGC 25841 28 100.0 32 ............................ CGCTGGCGCTGGGCGTTGGTCTTTGCCATGTG 25901 28 100.0 32 ............................ GCCTTCCTCGCCCAGATGAACGGCGGCTACAA 25961 28 96.4 32 ....................T....... AGGAATCGATGACGGCGCGCTTGGGGGGCGTC 26021 28 100.0 32 ............................ TGGAGAACGTGAAGCAGATCCTCCAATGGGGC 26081 28 100.0 32 ............................ GTCCGCGGCGTGAACTACGACGAGCGGCTCTA 26141 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 26201 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 26260 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 26319 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35557-34870 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDV02000054.1 Pseudomonas aeruginosa strain PABL018 NODE_54_length_35871_cov_70.4297, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35556 28 100.0 32 ............................ AGCTGACACGAACAACCCTGGAATGACCGGGC 35496 28 100.0 31 ............................ GGTACAGATCGCACGGGTTTTCGCGCAGGCC 35437 28 100.0 32 ............................ GGGTCAGCTCCAGCCCCTTGTCGTAGTAACCC 35377 28 100.0 32 ............................ GTTTGCCGATTGGGGATGGTGGTATCGAATCG 35317 28 100.0 32 ............................ ATCGGCGAGGGACCGCTCGCGATCACTGAAGC 35257 28 100.0 32 ............................ AGTACGTGGAGCAGGCCGCAAAGACAATCGTC 35197 28 100.0 32 ............................ ATCCCGGCGACGTCGGTCACGCGGGGAATGGC 35137 28 100.0 32 ............................ ATCGATCTGGTCGTCTACGACATGCACTACGG 35077 28 100.0 32 ............................ TATGCGCTGAACCCTGGCGACGTGTTCTGCGT 35017 28 100.0 32 ............................ ATATCGAAAGGCGGCGATATCATCGACTTCCT 34957 28 100.0 32 ............................ TGATAATGGCAAGTACGACGAAGATGCTCGCA 34897 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : AGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGACCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 316-1123 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDV02000109.1 Pseudomonas aeruginosa strain PABL018 NODE_109_length_17273_cov_64.0107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 316 28 100.0 32 ............................ GATCAGTAACGGCATCAGTTCAACCCTCGCGC 376 28 100.0 32 ............................ AAGTACAAAGAGAAAGCGCCTCAGATTGAGGC 436 28 100.0 32 ............................ TGACAAAAGCCTGACGCAACGGCGGCAGGCAG 496 28 100.0 32 ............................ AAGAGAAAACGAAGAGGTGCTTTCATCTCAGG 556 28 100.0 32 ............................ AAATTGGGGGTGTTACAGCACCCCCACCCCTC 616 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 676 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 736 28 100.0 32 ............................ GTTGCCGATCATCCGAGTTTTCGAGCCGTCCT 796 28 100.0 32 ............................ CTTGTGCTCGTTTGTCGCTCTCGATGCGTTCT 856 28 100.0 32 ............................ ACCATCACCACCACCGCCAGTACCACCAGTAC 916 28 100.0 32 ............................ TTCCGGGGTCTGGTCGTCCGCGTCGTCTTCCG 976 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1036 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 1096 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGTCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //