Array 1 237-30 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AOCD01000112.1 Streptococcus ratti FA-1 = DSM 20564 Contig186, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence         	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	========================	=====================================	==================
       236	    24	 100.0	    37	........................	TAACGATCGAAGCCCCGCTGCCATTGATACTCAGTTT	
       175	    24	  95.8	    37	.C......................	TGACTTGATAAATTCAAGAGCCTTATCTCCTTTGTTT	
       114	    24	 100.0	    37	........................	TAACGATCGAAGCCCCGCTGCCATTGATACTCAGTTT	
        53	    24	  95.8	     0	.C......................	|                                    	
==========	======	======	======	========================	=====================================	==================
         4	    24	  97.9	    37	TACCCGCACACGCGGGGGTGATCC	                                     	       

# Left flank :   GCACACGCGGGGGTGATCCTGATTACTTTATCGACATCAGCTCTTATCAAAAGTT
# Right flank :  CTGACTTGATAAAGTCAAGAGCCTTAGCTC

# Questionable array : NO	 Score: 5.56
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TACCCGCACACGCGGGGGTGATCC
# Alternate repeat :   GTTTTCCCCGCACACGCGGGGGTGATCCTGAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-9.30,-9.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//


Array 1 31-199 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AOCD01000150.1 Streptococcus ratti FA-1 = DSM 20564 Contig238, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	=====================================	=============================	==================
        31	    37	  94.6	    29	G.............C......................	GTTACAAAAGATAGTTTTCAAGGCTTGCC	
        97	    37	  94.6	    29	G...................G................	AACAAGCGGATAGCAGTTTGAATGTCTTT	
       163	    37	 100.0	     0	.....................................	|                            	
==========	======	======	======	=====================================	=============================	==================
         3	    37	  96.4	    30	TTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT	                             	       

# Left flank :   GTGCACTATATCATCAAGGATAGCTACTGGG
# Right flank :  GATACAAAAGATAGTTTTCAAGGCTTGCCGTTTTAGAGCTGTGTTGTTTCG

# Questionable array : NO	 Score: 5.49
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.50,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//