Array 1 38948-38187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXN01000014.1 Escherichia coli strain MOD1-ECOR28 ECOR28_14_length_118803_cov_90.3093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38947 29 100.0 32 ............................. CCCGCGCCGGTTGCTGTCGTCGCGCCGGTGGT 38886 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38825 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38764 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38703 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38642 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38581 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38520 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38459 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38398 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38337 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38276 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38215 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGCTTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65774-64647 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXN01000014.1 Escherichia coli strain MOD1-ECOR28 ECOR28_14_length_118803_cov_90.3093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65773 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 65712 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 65651 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 65590 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 65529 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 65468 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 65407 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 65346 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 65285 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 65224 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65163 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 65102 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 65041 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 64980 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 64919 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 64858 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 64797 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 64736 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 64675 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //