Array 1 2494-1445 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRID01000353.1 Streptomyces palmae strain JCM 31289 NODE_353_length_7187_cov_35.0809, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 2493 29 93.1 32 ...A..........C.............. GGCGAAGCGATCGTGCCTGTCTCCGAAGTTCT 2432 29 93.1 32 ...A..........C.............. CTGGTGGGCGAAGTCTGGCTCCGGCAGGGGCA 2371 29 100.0 32 ............................. TGGCCGACCGCACCGGCATGAGCCGGTCCGCG 2310 29 96.6 72 ............................G AACGATGAACGAGCCCCTCAAGGACCAGCGCAGTGGTCCCCCGATCGGCATGAGACGTTCAACGGTGGCATC 2209 29 100.0 32 ............................. TCCCGTCTGTCCCGGGCGGGCTCCTGGACTGG 2148 29 93.1 32 ...........A..C.............. GTGGTGGACGCCGGCCACGCGGAGAACCACCC 2087 29 89.7 35 ..........................GGT CCCACCAGGCCCCCGGCCTGCCTCACCCGAGGCGG 2023 29 96.6 32 ...........A................. AGCTAAAGAAAAAGCGGAGCGCCGCGCACGTC 1962 29 100.0 33 ............................. TGCCGATCCCGGAGGCTGGGCAGGACATGAAGG 1900 29 100.0 32 ............................. GGTGTCCGGCCTGGCGTCGACATCAAGTCGCG 1839 29 100.0 32 ............................. GGTGTCCGGCCTGGCGTCGACATCAAGTCGCG 1778 29 100.0 32 ............................. GCTCGACGGCCGCGCGTCCCCGTCTCGTACTC 1717 29 100.0 32 ............................. AGGGCGTCGGCGCGCTCCCGCGTCGGCGGGTG 1656 29 100.0 32 ............................. GAGCCCCGTGCCTGCCAGCGGAGGCGAGCCGC 1595 29 100.0 32 ............................. GTCTACCGGCCTCTGCGGGCCATGGCGAAGCT 1534 29 100.0 32 ............................. CCGAGGTCCAGCGAGTACTGGTTCGAACTCGT 1473 29 86.2 0 .............C.......C.T..G.. | ========== ====== ====== ====== ============================= ======================================================================== ================== 17 29 97.0 35 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GCGCCCCTCCATCCGCAGGGACTCGCCCGGCTGCGCCCCGAGCAGCGAGCCGACGACGGTGAGCAGGTCACCGGATCCGCGCCCGGTGTCGACCCGCGCGACGGTGTAGCCGTTCTCCTCGTTGGCGTAGGTGATGCGCTCAAGGACCCCCTCGAGCACCGCGAGTTTGAACATGCCCCGACGTTACTCCGGCGGTGTGACAGCGCGGGTCGCTGGCCGCGGGCGTGGGGTGGTCGCCGGAACGGGGTGAAGGGGTTCGCTGGGCGCGGGCTGGGGTGGTCACCGGCCGATCGGCCGTTACGCTGACGGGCGGTGCGCTACGGCTCGCGCCTCGGCGGTCCACCCGGCCTGGGAGGTGGGGTGGAGGGCCAAGGCCCGAAGGTTCGGAGTGGAGGGTGAGCATGAAACCGGGGCATGTGCCTGCTATTTCCTTTTGGTCCGACTCCCAGGAAGTGAGTAAAAACGGGCTGCGGCCGCGATAACGTCCCAGCTCAGCTCCT # Right flank : AAGGCGGCTGGGCACGGGGCGATCGGGGGCCTTGGTCTCGTGATTGCGGGGAGGATGCCGGTACGAGGTCAGCGCTGGCAGGCATGTCGGTGCTGGGCGCAGCGGGCGCGTGGGAAGGGTGGCGTGGATGCGGGAGTTCGATCTGGTTGTGGTGGGGTCGGCGAATGCCGATCTGGTGGTGGGGGTGGAGCGGCGCCCGGCGGCCGGGGAGACCGTTCTCGGGTCCGATCTGGTGGTCCACCCGGGCGGCAAGGGCGCCAACCAGGCGGTCGCGGCGGCGCGGCTGGGGGCCCGTACTGCTCTGCTGGCGCGGGTCGGGGACGACGCGTACGGCCGGATGCTGTTGGACGGTCAGCGGGCCGCCGGGGTGGACACCTCCGGGGTGCTGGTGGGCCGGGTGCCCACCGGGGTGGCGCTGATCACCGTGGACTCTTCGGGCGACAACGGCATCGTGGTCTCGCCCGGTGCCAACGCCCGGCTCACCCCCGCCGACGTACGGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12599-13237 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRID01000013.1 Streptomyces palmae strain JCM 31289 NODE_13_length_44333_cov_40.8835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12599 29 100.0 32 ............................. GCGTTGCCTTCTGAGGGAGGTCCGTGAATGCC 12660 29 100.0 32 ............................. GCCTCCCCAAGCGCCACCGTCTGGTGCCGGTC 12721 29 100.0 32 ............................. AGCGGACTCGCCCCCCGCCTGGCCATGCTCGC 12782 29 100.0 32 ............................. CGGGCTCCTCTCTTCGTCTTCGGGGGTGCGAC 12843 29 100.0 32 ............................. GGCCGCCCCGCCCGGCGGAAGCTGTTCGACCC 12904 29 100.0 32 ............................. GGTCCTCAAGTGGTCCACTGCCCTCTGAACCG 12965 29 96.6 32 .........................C... TCACCATCGCCCAGCTTGCCGACCACCTGGTC 13026 29 100.0 32 ............................. TCGGCCAGGACGCCAAGACCGCCCGGAAGAAC 13087 29 100.0 32 ............................. AGCGCGGTGCCCGGGGAGCCGACCTCTACGGT 13148 29 96.6 31 ............A................ TGAGCCCGCTAAGGTTCGAATAACACTTTGA G [13174] 13209 29 93.1 0 ..A.........A................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CCGAGCCCGGCTGTCGGTACCACGGTCGGCACGACCAGGAACCGCAGGCACCCGGGGGCACCAGTTCGCGACCAACAACCGGCCCCCGTAGCTCAGTGGATAGAGCAGGCGCCTTCTAAGCGCTTGGCCGCAGGTTCGAGTCCTGCCGGGGGCGCCGCCATCCAGAGCCCTCCCCATGTGGGGGGCTTTTTTGCTGGTCAACGGGACATTAGCGGGCCGCACGTAGCGAGAACGTAAGTGCGGGTGGGCCTGCGGCGCGGCCGGTAGCGACGGCCGGGGCACACCGGCACGGCAGGGCCACTACGCTGACGGGCGCACTTCGCCCCGCTCCTTCGCGGTCGGCCCACCGCGCGGGGAGGGGGCCAGAGGGCGAGGCGACGGGAGGCGCGAACGCGATGAGGGCGCGATCGAGGCTTTTGCCTGCTATCACCTTTTGGTCCGACTCTTGGGAAGTAAGCAAAAATCGGCTGCGCCCGCGGTAAAGGCGCAGGTCGGCTCCT # Right flank : CCGGGTTCATTCGCTCTCACGGATCCAGGATCCTTGCTCCCCGCGCACGCGGGGCTATGAAGAGCCAACAGAAAGCTGCAGTAAGGCCATACCTCCTCCTTCCGAGAGTTAGGCGCTCGAGGACTCACTGAACGACCCTGACTGGCGGCAACCGCCACGGCACGCAGTTGCTATCCCTGCTCGACGTGATCCCCTCACGCCCGAGGGAGGAGCGGCCGCCCACGTGACCGCCCCGACAGCTACTCGCCAACCAGGGCCACAACTACGACGTACCGCCGATCGCTAGAGGAAGATGCCCGCGACGTGCAGCCCGGCCAAGTAGATGGCCGCTGTCTTCTCGTAGCGGGAGGCGATCCCGCGCCACTGCTTCAAGCGGTTGATGCAGCGTTCGACAGCGTTGCGCTGCTTGTATGCCTCGCGGTCGAAGGCGGGTGGTCTGCAGCCCCGGGTGCCGCGGCGCGGATGGCGAGCGCGTTGATCGGCCGGCACGGGGATGACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24693-25148 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRID01000013.1 Streptomyces palmae strain JCM 31289 NODE_13_length_44333_cov_40.8835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24693 29 96.6 32 ...G......................... TCGTAGTCCCCGCCCTTCAGCAGCCGGAGTGC 24754 29 100.0 32 ............................. CACCGCAGTCCGCCGGCGGGCCGAGAAGCTGA 24815 29 100.0 32 ............................. ATGATCCGGACCGGCGCACTGGAAAAGCTGCT 24876 29 96.6 32 ..............C.............. GCGGGCCGGGTGGTCTCGACCGGGAAGAACAG 24937 29 89.7 32 C..G.......T................. CAGACCGTGAACCTGGACCAGATTGGCGGCGA 24998 29 93.1 32 ...G.............A........... GTGGAGTTCCTCGCGGTGTGGTGTTCGACTTC 25059 29 93.1 32 ...G...................A..... TGCGGGTGCTCGCTGACACGGGCCAGGATGAC 25120 29 86.2 0 ...G..........C..C.......C... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTGCTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GGCTGCTGACCAGCGGACGCAACTACGGGGACGAGCCGCTCTGGTGACCGTGATCGTCCTCACCAACTGCCCGGCGGGCCTGCGCGGGTTCCTGACCCGATGGCTCCTGGAGATCTCTCCGGGCGTCTTCCTCGGCTCACCGTCGGCCCGCGTGCGCGATGTCCTCTGGAACGAAGTCCTCACGTACTCCGGCCAGGGCCGGGCGCTGCTCGCGTACACCACCGACAACGAGCAGGGCTTCACCTTTCGCACCCACGATCACTCCTGGCACCCCACGGACCACGAGGGCCTCACCCTCCTCCACCGCCCCGCGGCCCCGTCCCCAACCCGTCCCATTACCGAGCCACCACGCCAGGGGTGGAGCAAGGCGGCAAAGCGGCGAAGGTTCGGACGATGAGACGGAGGAAGGCTGGATCGGTATCCGTTATGACCCTTTGGCCCGAGTCTCGGGAAGTGAGTGAAACGGCCTGCGCGCGAGATGAACACGCAGGTCAGCTCCT # Right flank : CGGCCCAGCGCGCCCCCGCGGCATGGCCATGGCCCCGAATGCGGGCTGGTGGTGAGCGCATATGCTGGTCAGAGACGTCTCGGCGCCGGTGCGCGGAGCATCGGGTGCGGCCGGGAACGGGGCCGGGGCGCCCGTGGTGCGCTGGTGCCGGGTAGGCCCGTCGGGCGGGAGTCTCCCCTTCCACGCGGCTGGGCACGGCCACGTCGACACCATCGGACGGCGCCGCCGAGGGCGTCCTCTTCGCCATGCCAGGGAGTGTGCAGTGAGTGTGACCGAGCCCCCGTCGTCCGGCGCCCCGGACGCCGCCGCCCCCGGTGAGCTGCGTGCCGCGATGCTGGAGCGGGTGGAGGCCCGGCTGGCCGGTTTCCTCGCCGGGGAGCGGCGGGAGTGGGCGGAGCTGAACCCGGACGCGGTGGAGCTGGTGGACTGCGTGGCCCACATGGTGGCCAGCGGCGGCAAGCGGCTGCGCCCCTCGTTCTGCATCGCCGCCTATCTGGCCG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //