Array 1 125766-125445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWHD010000003.1 Staphylococcus singaporensis strain SS90 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 125765 36 100.0 35 .................................... ACAAATAAGTGTTTATTAACTACCTTAACATTAAT 125694 36 100.0 36 .................................... TACACTATCTTAATTCTAGTGTCAAGTATTATTTTG 125622 36 100.0 35 .................................... TCTAAAAAAATACTCATCATAGAAAATGAATATTG 125551 36 100.0 35 .................................... TCCTGCGTCATGTCTTTATATTTTTTAGTCATGGT 125480 36 97.2 0 ................................A... | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 99.4 36 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTAGCT # Right flank : CTCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAAGGGGAACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTTGGTATGTCAACATTTTTTAGACAGTTTTCATGTGTAGATTTTTAAATGCCACTGCCGTCAAATACTGTAATGAAGAATGTGGTCTAAAATTGTTGTACCAATTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 134949-134487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWHD010000003.1 Staphylococcus singaporensis strain SS90 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 134948 36 100.0 35 .................................... TTATAACTATCGTGATAATGTAAAAAATTAATAAT 134877 36 100.0 35 .................................... AATAATGCTCTTACGATGTATTCTTTTTTATTTCC 134806 36 100.0 36 .................................... CCATATGTTCATCTATGGCAATACATTTTCCTTTTT 134734 36 100.0 35 .................................... TGCGATACTTGCGAATCCTGCAATTGACCACGCTG 134663 36 100.0 35 .................................... AATAAAGTTAGTTGCTTCTGTTCCTCGTATTCCAA 134592 36 100.0 35 .................................... TCAAAATTAAATGTTTGTAATTCTTGCAAATTTTT 134521 35 91.7 0 ..............................-...GT | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 98.8 35 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCATCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTGCTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTAAATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTAACATCTCATATAGTAGCGTGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : GTAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATATAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTACGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAATTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 125852-126042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWHD010000001.1 Staphylococcus singaporensis strain SS90 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================== ================== 125852 25 100.0 31 ......................... ATGGATCAAATTTCTCTATGTTGGGGCCCCG 125908 25 100.0 30 ......................... GAGATTCTAATTTCTCTATGTTGTCCCACC 125963 25 100.0 30 ......................... GAGATTCTAATTTCTCTATGTTGTCCCACC 126018 25 88.0 0 .......A.T...C........... | ========== ====== ====== ====== ========================= =============================== ================== 4 25 97.0 31 CCAACTTGCATTGTCTGTAGAAATT # Left flank : TGCGGCACTTATTTCAATTCGATTTAAGCCAATCTCTTCGAAACAATACTTTATCAATATCTTGACGGCTTGTGTCATAACTCCTTTACCCTCAAATTGTTTATCCAAATAGTATCCTAATGATGTTTTTCTATGCATATGGTTAATTTCATGTAAACCGACTACACCAGCTAGCCTTCCTTCATACCAAATGCCACACTGAAACCCATTACCATCCGCAAATTGCAAAAGCCCTCTTTTAATAAACGCACGCGTATCTGATGGCTGCTCAGTTGCATCTACCCAAGGTAACCATTCCCTAAGTGAATCTCTTGAACGATTGACTAAATTGAAAAGCGCTTCTGTGTCATGAGCTTCTAAAATTTTTAATGTTATTTGTTCATTCACTTTCATTCCAAACATACCATCACATCCTCATTCATTTTTCATATAATTCTGTAAATTATTATTATAATAACATATTAATGTTACGCATTGTATCTTAAATTTGTTGTCCTACC # Right flank : TGTGGATCCAATTTCTCTTTGTTGGGGCCCCGCCAATATAGCGTTCTAGTGCCTATTACTTTGATTTATGCCCTAAGCTCCTGTCACACAACTTAAATGAAATAACAATTTATTAACCATTCCAAATTTATATTTAAAAATACGACAAAACAGTGCTAAAATGCTATTAAAGGGGGCACAGCTCATGGCATTATCGAAAAACAAGCATTTTATTGTTGGACTATCATTAACATTTATTGTGGCTTTATTTAGTTTTTTAGTAGCTAAATTACCAATATTAGATAAAGTCGGTGCACTAACTATCGCGATATTAATCGCTATTCTGTATCGTCACTTTAAAGGATATCCTGAAAAATATAGCTCAGGTATTACATTTTCATCCAAATATTTATTAAGATTTGCAATTATCCTATACGGACTTAAACTCAATATATTCGACATTATCGGGCAAGGAAGTAAATTATTGGCCATTGATGTAGGCGTCGTTATTTTTAGTATTG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAACTTGCATTGTCTGTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //