Array 1 630982-629830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKN010000001.1 Pseudomonas aeruginosa strain ZYPA23 NODE_1_length_860994_cov_30.947344_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 630981 30 100.0 36 .............................. ATGTGGCGCCAGTCTCTTGATGGCCTTTGCAATTGT 630915 30 100.0 35 .............................. ACCGTAGCCACCAACCTGGGAATGCGCGCTCTGGT 630850 30 100.0 35 .............................. CTCACGTTCCCCACGTCGCGGCTTACCGGATACGT 630785 30 100.0 36 .............................. AGGACGGGCACTTGCAGATCGCCCAGGGCAAGACGT 630719 30 100.0 36 .............................. ATGAACGGGACTCCTGTAGCTGTTGTATGGCCTCGT 630653 30 100.0 36 .............................. CGCGAAATGCTGACCCTGATGCCGGACATCGAGTGT 630587 30 100.0 37 .............................. TTCGATAGCACCTATTCAGCTGTAGACGTTGAGAAGT 630520 30 100.0 38 .............................. GCCAAGCTGTGCTTCGAACACCTGGGTATCAAAGTCGT 630452 30 100.0 36 .............................. ACTGAACAGGAGAACGCCAACATGGCACCGAAGAGT 630386 30 100.0 35 .............................. ACATGCGCCAGCACAGCACCGACCGATTGAGGTGT 630321 30 100.0 36 .............................. TGCTACTGGGATGGGGAATGGTTACACAATTGGAGT 630255 30 100.0 36 .............................. GGCGCAAAATGGACGGCTGTGCGTGTCGGGAAACGT 630189 30 96.7 35 ...C.......................... CCTACCGATGAGGTCACCCTCGAACGCGCTCTGGT 630124 30 100.0 39 .............................. GGCATGACGCGAGACGTAGCGCTCGCCATGGCCAAAAGT 630055 30 100.0 36 .............................. TGGGCCCGTGATCGCGCGGCGCCGATAAACGCCAGT 629989 30 100.0 35 .............................. TCCAGCGCCGAGCAGGCGCATACGTGATCCCCGGT 629924 30 100.0 35 .............................. CGCATCAACGGCAGCGCGTACCCAACGAAGGTCGT 629859 30 90.0 0 .......................GC....G | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.3 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATCTATATACTCTTTCTTTGAAGTTAGGAGCTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ACAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAACAACTCTTGTGTCACGGTGTCACGGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCGGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAGCAGGTCGATGAGCTCGTCATCGCCGGCGACGTCGTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 486-158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKN010000025.1 Pseudomonas aeruginosa strain ZYPA23 NODE_25_length_22443_cov_29.245522_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 485 28 100.0 32 ............................ TGGCGCATGACCTGACTCAGCAGGTCCGGCGA 425 28 100.0 32 ............................ TCCACCGAGGGCCAGACGGGAAGTCAACACGC 365 28 100.0 32 ............................ ATCAGCCACGCCTTCACCGGTAAGCCCGGCCG 305 28 100.0 32 ............................ TTTGAGTGAGCGGTAGTGCGCTATGCGTGAGC 245 28 100.0 32 ............................ ATCGCCGGCATGAACGAGGCGCATGCGAAGTT 185 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ATGGCCGTAACCCGTGGTCAGGCTGAGCGGCACGTTCACTGCCGTGTTGACCTGCCCCCAGTTTTAGTACCGCTGCCTAGTCAGTAGGCCCTGGGGTTGATATTAATTTTTCCTGCTTCAGCTGCTGCTGGCGAGTTCGCCAACTTGCAGCAAATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //