Array 1 942288-945641 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJN01000001.1 Erwinia amylovora strain MAGFLF 2 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 942288 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 942349 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 942410 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 942471 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 942532 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 942593 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 942654 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 942715 29 100.0 32 ............................. CAATATCTTTTGTTTGCGTATAGATATCCTGC 942776 29 100.0 32 ............................. GTCAGGGAACTGACCAAAACCAGCTTTGAAAT 942837 29 100.0 32 ............................. TCCTCCTGCAGGCGGAGCATGAGGATAAAGTC 942898 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 942959 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 943020 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 943081 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 943142 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 943203 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 943264 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 943325 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 943386 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 943447 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 943508 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 943569 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 943630 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 943691 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 943752 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 943813 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 943874 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 943935 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 943996 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 944057 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 944118 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 944179 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 944240 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 944301 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 944362 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 944423 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 944484 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 944545 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 944606 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 944667 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 944728 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 944789 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 944850 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 944911 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 944972 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 945033 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 945094 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 945186 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 945247 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 945308 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 945369 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 945430 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 945491 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 945552 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 945613 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 55 29 99.3 33 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 954681-957151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJN01000001.1 Erwinia amylovora strain MAGFLF 2 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 954681 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 954742 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 954803 29 100.0 32 ............................. TACGTCAGCGGCATTATAAGGATTTACACGGA 954864 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 954925 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 954986 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 955047 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 955108 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 955169 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 955230 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 955291 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 955352 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 955413 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 955474 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 955535 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 955596 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 955657 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 955718 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 955779 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 955840 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 955901 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 955962 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 956023 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 956085 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 956146 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 956207 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 956268 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 956329 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 956390 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 956451 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 956512 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 956574 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 956635 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 956696 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 956757 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 956818 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 956879 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 956940 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 957001 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 957062 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 957123 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.3 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 966611-966939 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJN01000001.1 Erwinia amylovora strain MAGFLF 2 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 966611 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 966671 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 966731 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 966791 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 966851 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 966912 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //