Array 1 71375-70004 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000001.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71374 29 100.0 32 ............................. TTCGTCAGCGCGCGGTTCAGGTACCAGGCCAT 71313 29 96.6 32 ............................A TGACGCGAGACACGTACCCCGGCTCATACCAG 71252 29 96.6 32 ............................T CCTGCGATCAGGTCGGGCGTGCCCGTGATCAT 71191 29 100.0 32 ............................. TCGCTCTTGGTGCGCTTGACGGCCGCAAGGTC 71130 29 100.0 32 ............................. CGGGCGCCGGTGGCGAGACGCTCGCCCGCGAT 71069 29 100.0 32 ............................. ACGGCGGATACCACTGGCATGGTGAGCTGAGA 71008 29 96.6 32 ............................C ATGCCGCGCAGCCGCGTGAACAGGGACGGAAC 70947 29 100.0 32 ............................. CCACCCTCACCGTGCGGACCGGCTCCGGCGGC 70886 29 100.0 32 ............................. TCGGCCGGCGTCATCTGCTCTGCCGTGTTGTA 70825 28 96.6 32 .....-....................... TTCGGCGGGTACGCGTTCCAGGACGACCCGAG 70765 29 100.0 33 ............................. GTTCGCCGTCACCGCATCGGGGGCGCACGGGTC 70703 29 96.6 32 ............................C CAGACCTCTTGGATCGGGCCGCCGAAGTTCTG 70642 29 96.6 32 ............................T CGTGTACGACAACGTTGAGCGGGCCGCGTGGG 70581 29 96.6 32 ............................C TGGAACGGCGCGAACTCGGTCCACACGGTGAC 70520 29 96.6 32 ............................C TTCGGCGGGTACAAGTTCAGCGATGACCCGAA 70459 29 89.7 32 ....C.T.....................C GGCGAGTGGTACGAGGTGGACCCGTGGTCGCG 70398 29 96.6 32 .................T........... GCAACCGACGAGCCGGCTCAGTTGCGCCGCCC 70337 29 96.6 32 ..........T.................. CCTGGGATCTCACTCATTGGACTCCGGCGCAT 70276 29 89.7 32 ........................C.T.C GGCACGGCCCGGCTGACGCCGCGTCAGCAGCG 70215 29 96.6 32 ............................C CAGCACCCGAACCAGCCACCGGGGGACTCGCC 70154 29 86.2 32 ..TA.................AC...... CCACCAACCCCGACCACATGGCCGCCGACCCG 70093 29 86.2 32 ..T..TA.................A.... GCCCGCGCCGCGCTGCGCGCCGCCGCCCGCCA G [70071] 70031 28 89.7 0 .....T......T........-....... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 95.8 32 GTCGTCCCCGCACGCGCGGGGGTCTTCCG # Left flank : CGGACCGCCTGCGAGAGGCCCTCGTCCTTGCACTGGAAGGCCGGCACCGCCTTCCCACAGTCGTGCAGCCCACACAACAAGGCAAACACGACCCGCCCCTGCTCGTCGCAGGAGTCGTTGAGATGCCTCTTCACCGCCGGCGCCAGATAGAAGTCCCAGATCAACTCACCGACCGCAGCCGAGTCCAACAAATGCTGCACCAGCAGGTTCTGCCTGCCGCCAGCATTGGACTTCCCCCACAACACAGCGAGGGCGCCAGTCGGATCCGAAACCATGGCGTGCACCCTAGAACGCCCTACCGACAGCAACCCTCGACGACGCGAGCCCAGTCAAAACCCCGACTAACACTTGACCAACGCCCACACGCATACTGCCGCCCGTACGATGGTTCGCCTGCGAGGAAATGACTCCAGGCGCAGACACCGATCGTTGGGGAGATATGGCGGCGAGGACTAATCGAACCAGGCCCCTATCTCGCCAATAAGAGCAGGTCAGCAAGC # Right flank : ACGACCAGGAACGCGCAGGCCGTCGGCAGCGGGGCGTCCCCGACATGCCACAGCAGCAGCCCGGCATCGAGGCGACGTTGGACGCGTGGTGGCCGCGGATCTGCGAGTCCGGCGCCGAGTTCTAACCCCGCCGTGCGAGCACCCACTCACCTGTATTGAACCTGCTGCTGAAGGGGTCGAAGCCAACCCACCTGCCCGTAAGCACACCCCCGCCGTCCATCACCAACTGGAGCGCACCGTGGAATCGCTGTCCTCGATATTCCCCGTTCGGGTCGGTGATCTCCGACCAGGTCCCGGTCACGACCCACCCTGTGACGTCGAGCGAGAGCTTAAGGGTTGAGGCGGACCACGGTCGGCTCCGGACTTCCAGATGATCACCGTCCTGGGTAATGATCACGTCGTGGGTGACGGTGACGTCTTTGTCCTGGCTGGTTGAGAAGCCGTTGTATCGGCTAAACCAGGTGCCCGAGTAGTCGTATTCGCTCACGTAGTGCTCCCCT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81282-86470 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000001.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81282 29 96.6 32 ............................C CCGAGTCGTCATGACACCCTTCAACCCGTGAC 81343 29 96.6 32 ............................C CTCGCCGATGCGCTCTTGGCCCTGCGCGGAGT 81404 29 96.6 32 ............................C TCGCGGAGCTGCCGGGGGATGGCCACCTCAAG 81465 29 96.6 32 ............................T TCGGAGTTCCCGGCACCGACATGCCGAATTCT 81526 29 100.0 32 ............................. GCAGGCGACGCGTGGCCGCTGCTCAGCTCGCT 81587 29 100.0 32 ............................. GCCGGCACCCCCTACGTGGTGGGTGAAGAGGG 81648 29 96.6 32 ............................A GCCGATCGTCATCCCACACGGCGTCCGCGTTC 81709 29 96.6 32 ............................T AGGACCATGCGCCCATCATCGGCCTGATGCCC 81770 29 96.6 32 ............................C CGGGCTGTCCGCTTGATGTCCGCTAACCAGTT 81831 29 96.6 32 ............................C TGTTCGGTCGGGTGGGCGCCGGCCGCAGGAAG 81892 29 96.6 32 ............................T GGCTGCCCGAGCACCACAGCGGCGAGGTACCC 81953 29 100.0 32 ............................. CGCCCCCGCCCGGGATGGGTGGGGGCGCTGTC 82014 29 96.6 32 ............................C CAGGCGATCTGCTCATCCGACGGCTTCCGGTC 82075 29 96.6 32 ............................T CCTCCTGTCCCGCGCCGGCTGGCCGGAAATCC 82136 29 96.6 32 ............................A GACGGCCGGGTCGTCACGAGCGACCAGGCGTG 82197 29 96.6 32 ............................C TTCACGTCCCGGACGATCCCGACCGCCGTTTC 82258 29 96.6 32 ............................C GCCGCCCGGCGGGTGTCCGAGCGGGCGGCAAC 82319 29 100.0 32 ............................. AGGTCGCCGAAAAGTCAGGCGTGCACCTCTCC 82380 29 96.6 32 ............................C CCGGGCCCGTAGCCGTCATCGGGCCGCGGCAC 82441 29 100.0 32 ............................. GCCGGCGACGCCTGGCCCAGCGTGCAGACGAT 82502 29 100.0 32 ............................. GGGTGGAACGCGCAGAGCGGGGGCGAGCAGGT 82563 29 96.6 32 ............................C TGGACCGCCGAGGGCGCCGAGGTGCCGGACAA 82624 29 100.0 32 ............................. GCGGGCCTGATCCGCGCCCGCGCGGTCATGAA 82685 29 96.6 32 ............................C GTGGACGAGGGCCGGCACCCTCCCCGGATGCC 82746 29 100.0 32 ............................. GGACGCCCGCCGGGCGTCCTCTCGCGAAGGTT 82807 29 100.0 32 ............................. CGAGGCAGCTCCTCGTCGGCGGACGGGCGGAT 82868 29 96.6 32 ............................C GATCTCGGCCGCGCGGTCGCTATCGCTATCGC 82929 29 100.0 32 ............................. GCGTTCGCCATCTACAACGCGTTCGTGACGGA 82990 29 100.0 32 ............................. CACGGCGGCGTGCACCCGGGCCCCTCGGAGGA 83051 29 100.0 32 ............................. CACGGGGACCACGACCGGGTGGCGATGCTGTC 83112 29 96.6 24 ............................T GACGCTGTTGGCGTGCCTCACCCA Deletion [83165] 83165 29 89.7 32 .CA....A..................... AGCTACGCCCCCGCCTAGGAGTCCGTACGGTC 83226 29 96.6 32 ............................C TGCACTTCGTCGACGTTGACGCGTACGGGGAG 83287 29 100.0 32 ............................. CAGGCCAAGACCAAGGCCAAGGCACGCGCCCG 83348 29 96.6 32 ............................C CGGCCCGCGACCATCGGGGAGACCAGCGACGT 83409 29 96.6 32 ............................C GCGGACGACACCCCCGGGTCGCTGCCAGAGTC 83470 29 96.6 32 ............................C ACGGCGCAGCCCTTTTGCTCGCGGACCTGCCG 83531 29 100.0 32 ............................. GTGCAGCCGAAGACCCGGTGGACCACGGAGGC 83592 29 96.6 32 ............................C GTGCCCTCCCCGCGCACGGGGACGGTCAGCCC 83653 29 96.6 32 ............................C TGCCAGTAGTAGGCGTGGACGTCGGTGTCGAC 83714 29 96.6 32 ............................C CTGGGCCGGCGCATCAACCCTGACGCCCTGCT 83775 29 96.6 32 ............................C TCCGGGCCGGCCGGGGCGCTCTTCGCCGCCCG 83836 29 100.0 32 ............................. ACCGCCGTTCGGCTGCTGGCCGCGCTGGGCAG 83897 29 96.6 32 ............................C TTCCGCGCGCCGGACAGCTTCACGCCCCGCTT 83958 29 96.6 32 ............................C GCGACCGGTCTCGACCCGGAGGATCTGGGCAT 84019 29 100.0 32 ............................. CTGCTGGCGGCGCTGACCGCTCTCGGGATGAC 84080 29 100.0 32 ............................. TCGCGTTCCCCGCCGACCGCGTCCCGCTCGTT 84141 29 100.0 32 ............................. ACCGACCACGCGGATTCGCTGTGCATGTACCG 84202 29 100.0 32 ............................. CAGCTCTTCGGCGACCTACGCAAGCAGCAGGC 84263 29 100.0 32 ............................. GTGACGGTCTTTCCGCGCGTGTTGCGGATGGT 84324 29 100.0 32 ............................. TCGGCCAGCGGCGCCAAGGGCACCGCCGTAGC 84385 29 100.0 32 ............................. GGGGGCCGCTGCACGTTGGTCGGTCCTGGCCG 84446 29 96.6 32 ....C........................ AGCTGGCGACCACCGTCACCGGCTACGTCATG 84507 29 100.0 32 ............................. CGGCACGGCCGTATGCGGTCCCTGCTCAACCG 84568 29 100.0 32 ............................. GACATCGCCGAGGGCCACCGGCACCAGTGGAC 84629 29 96.6 32 ............................T CCCCACGTCAGGACCCCTCTCCGGGCTCGCCG 84690 29 96.6 32 ............................C GAGCTGTACCTCGCGTTGACGCGGCTGACCAC 84751 29 96.6 32 ............................C AGCGGCTGGATCAACGGGATCCTGTGGGAGGC 84812 29 96.6 32 ............................T CCGTACGCGTCGTCGTCGTCCATTTCGCCCGC 84873 29 100.0 31 ............................. ACCAGAGAGGTATCCGACACGGCGCACCCCC 84933 29 100.0 32 ............................. TCGCTCATCCGGTTGAACACTTCCTGGGCGCT 84994 29 100.0 32 ............................. CGGTAGCCGAGGGCGGTGAGCTGCTCGCGCCA 85055 29 100.0 32 ............................. TCGACGCCGTCCGATAGCCACGCGGCGTTGGT 85116 29 96.6 32 ............................C GGTCCCAACGGCTGGTCACGCCATCACCTCCG 85177 29 100.0 32 ............................. TGGGGGAACGACCATGGATCCGATCACCCTGG 85238 29 100.0 32 ............................. GTCGCCGCCGCGATGCGGTCGTTCGGCGAGTT 85299 29 96.6 31 ............................T CGTCGAGTGCCTTTTCGACTGGCATCGCCGG 85359 29 100.0 32 ............................. ACCTGATCATGTACCTCGCCGCGCAGCCCCAC 85420 29 96.6 32 ............................T GACTCCGGCGGCGGCGTGGCGTGCGAGCATCG 85481 29 96.6 33 ............................C CTGGTCCGGATCCACGCGCCGCATGCGCGAGCT 85543 29 100.0 32 ............................. GCTGCGGCGTTGGTGATCTCGCCCTCGGCGCG 85604 29 96.6 32 ............................C TGCAGGTCGGCGACTTCGGGTTCACCTCGATC 85665 29 96.6 32 ......G...................... CTGTCGGCCACCCGCTCTCACCCCCCTGCCTG 85726 29 96.6 32 ............................C CAGCGCCCGCGCGGCGTCCTCCGGGTTGACGT 85787 29 100.0 32 ............................. TCGCGTTCACCGCCGACCGCGTCCCGCTCATT 85848 29 100.0 32 ............................. CGGGAGCTCGACAAGGTCCTGGCGAACCCCAG 85909 29 96.6 32 ............................C GCTTCGCCGTCTCTGCCTCCGTCTGGGCAGCC 85970 28 96.6 19 .....................-....... GTCGGCATCACCATTGTCG Deletion [86017] 86017 29 100.0 32 ............................. GTCGTCGCGGGTGTCTTCGTCGTCGAGGACCA 86078 28 96.6 32 .....................-....... CGGGTGCGCCACACCCGGTGATCCGCCACATC 86138 29 96.6 32 ............................C TCACCGGTGACGGTGACGTTGCGCCCGCCGAC 86199 29 89.7 32 .........A..........A.......T GCGTGGTGCCCATCGCCGGATCACGGCCGACG 86260 29 96.6 32 ............................C CTGTTCGAATCCCGGAAGCCGTCCGGCCATCT 86321 29 100.0 32 ............................. TACGGCGGGTACGCGTTCCAGGACGACCCCCG 86382 28 96.6 32 .........-................... GACGCCGGGCGGGACCTGAACCGGCTGCGGGC 86442 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 86 29 97.9 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCG # Left flank : ACCCGCATCGTCCAGGACATCAAGGCACTACTACTCGACGGCAAAGACGACGACCACGACGCAGACGCCCACGAACTCTGGGACGACACGCTCGGCTCCGTACCCGGCGGCATCAACTGGGCACATGAGTACGCCGACAGTCTGGACACCGGCTCCTTCATCGGAGTCACCGGCCCAGACCTCAACGAACCCAGGTGGGACTTTTGACCGTCATCGTCCTCATCGCCGCAGCAGAAGGACTACGCGGACACCTCACCCGGTGGATGATCGAGGTCGCCGCCGGCGTCTTCGTCGGCAACCCCAGCACACGAGTACGCAACCGCCTATGGACCGTACTCTCCACCCGGGTAGGAGACGGACAAGCAATCATGGTCGAGCCGGCCCGCAACGAACAAGGATGGGCAATCCGCACCGCAGGCCGCGACCGCTGGCTACCCGTCGACCTCGACGGACTAATCCTGGCAGCCCGACCCCGCCGATAAAACGCCAGGTCGGCAAGC # Right flank : GGCTACGTGAATCCGGCAGGTCCAGACGAGAGGCCAGCGGACGCAACTCGATTAACCGCGGTTAACCAGGACACGCCGCCTGGATCAGGGCTTCTGGTCAGGCCCTAGGCAGCCCTAGCATGGCGGGCATCCGAAGTACCGCGGCCACGATCGGCCCGGGAAGCACACGGAACGGAGCCCGCATGACTCAGGTGCATGTCGTCGCCAACCAGAAGGGCGGCGTCGGTAAGACCACTCTCGCCGTGAACCTGGGGGCGGTGACCTACGACGTCTTGGTCAACCCCGAGCCGATTCTCCGGTCAACCGCTGAAGCTGTCGGCGATCCAGAGAGCCCGGTAATGGTTGCGTCCACAGACCCCCAAGCGTCGTCCGTGTGGTGGTCGAGGCGCGTGGAGCAGCAAGGAGGAGGGCTGCCGTTCGACTTCGCTCAAGTCGACGACCCCCGCGATCTCCGAAAGCTGCGGAACCTGCACTACGAGCACATCTTCGTCGACACGCCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6589304-6590061 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000002.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6589304 28 100.0 33 ............................ ACCGGTGATCGGTGTCCTCCAGTTGCGCGGTGA 6589365 28 100.0 33 ............................ GAACCGCCAGATCAGGAGCAGGCCGAGCGCGGC 6589426 28 100.0 33 ............................ CCGTGCTGACCCAGCTTCTTCGTACGCGCCCGG 6589487 28 100.0 33 ............................ CGTCACAGGCCGGGCTATCGGCCGGCGGGACGC 6589548 28 100.0 33 ............................ CCATGGCTGACACCAGCATCGAGTGGACGCAGC 6589609 28 100.0 33 ............................ GCGGCACAGGTATCCGCGCTCGGTGGCGAACAG 6589670 28 100.0 33 ............................ TACGACCCGAGACAGCAGTAGCGGGGCCGGCAC 6589731 28 100.0 33 ............................ CTCGTCGGACTTCTCCTTCACCCGGGAGATGCC 6589792 28 100.0 33 ............................ GTCCCACGCCGTGCCACCTGACAGCGACCGGGT 6589853 28 100.0 33 ............................ GTCCGTCGTCACCACGGCGCCCGACAAGACCTT 6589914 26 89.3 33 .....-....A......-.......... GGTGTCGTCCCGGGTCGCCGGGATCCTCGGTGA 6589973 28 100.0 33 ............................ CAGGATCTCCACGTCACGCCTCCGCCGTCGCGC 6590034 28 96.4 0 ........................G... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CAGCGCATGATCTCGGTCTTGGCCTTGCCCTCGACAGCGGCGGCGGGCAACGCAGTCCTTGGGCGAGTGGTAGCCCTACGGACGAGAGTACTGCGCCAGTTTGCACTGTTGGCGTCACGGCCAGCGCCGCAGTGGGAGGCGGTAGCTGCCGGTGCGCCCGAATCATGCCGGGGGCGAGGTCGCGGAGCCCGCGCAAAGACGGCTTGAGAGCTCACCCGCTGCGGCGTTGCCCGACGGCGGTGACGAGCAGTTGTTTGGCGGTATCAACGCCGATTTCGGGAGGCGCGACCAGGTCTCAGCTGTAGCCATGACGAGATGGGTCAGGTGGCTGTCGAGGTCGTCCATGTAGGCGAACTACGCCGCCTGTGTGGACGACACACCCGCTACGCTGCACTCAGCGCCTCGTCGAATGCGAGCCGCTGTCTCCGAAAGGACGATCTTGCGGGTCCAAGTGAAGGAAAACCGCTCTGTCGATCTTTAGATCCCCAGGTCAACAAAGT # Right flank : CCTCGCAGATCATCGGTAGCTCGACGGCCTCCGATAGTTCGCGGGTAGCCGGTGCGGGTCCGCCGCCGGTCCGGCTGGATCCGGTCGGGCTGCTCGACGCGCTGCCGGCGACGGTGCGGCGGCGGGCCCGGCAGTGGGAGCGGCACGTCGTGGAGATGCAGACCGGGTTGCCGCCGGCCTCGCCGGCAGGTGTCCGGCCGCGCGAGCCCTACGACCCGGCTCGGCACACGTTGGCGGAGCGGGAGGCGGTCAAGGCGACCGAGGCGGGGCAGCCGACCAGCGCGGTCACGGTCAAGCGGATGCGGCTGCGCTACCGGTCTGAAGGGCTGTGGGCCTGGTCGACCACCGGGCCACTCGCCCGGCGTCCTCCTAAGGTCGGGTCGACGACCAGGTGGTCGCGGCGGTCGAGGCTGTGATGGTGGCCGAGACCGGGGAGTCGACAGGCACCCGGTCGCGGCTGCGGCACCGGGTGGAGCAGTTGCTGGCCGTCGAGCACGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 6720458-6721767 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000002.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6720458 28 100.0 33 ............................ CTACCTGACGTTCCTCCGGCAGCAAGGGCAAGC 6720519 28 100.0 34 ............................ CGACTGCGCTGCTGATGCTGGCCAACCCGACCGA 6720581 28 100.0 33 ............................ CACCTCTGCGACGGGCAAGGCGCTGGCGCTCAC 6720642 28 100.0 33 ............................ GGTCGGTAGCTCGGCCGGGGAGCACGACGACGA 6720703 28 100.0 33 ............................ CACGATTTGCGCGTGGCTGGCCTGGCAGAACCA 6720764 28 100.0 33 ............................ GTCTGCGGACCGCGCTGCGGGCATCAGCGACGA 6720825 28 100.0 33 ............................ GGCGATCAGGTAGACGTACCCGCCTTCCCTGGT 6720886 28 100.0 33 ............................ GATCGGGGGCGGGTGTGGCTATCGGCGAGGGCT 6720947 28 100.0 33 ............................ GCCGACGAGATACCGCTGGTCGCCGACGCCCTC 6721008 28 100.0 33 ............................ CCAGTTCGTCCAGAGGCTCTGCCTTGATCGCGA 6721069 28 100.0 33 ............................ CGGCGGTAAGCGTGTCCATCCAGCCGACAAGAG 6721130 28 100.0 33 ............................ GTCCGTCACGGCTCACTCCAGGGACAGCTCGAC 6721191 28 100.0 33 ............................ GGGTCGAGCGGAGACGTCGCCGACGTGGAGGAT 6721252 28 100.0 33 ............................ GAGGAAGAGATGGATGCGAAGCAGTTCGCCGCG 6721313 28 100.0 33 ............................ CTACTGACTTCCGTAGTTACTGACTTACTGAGC 6721374 28 100.0 33 ............................ CCAGTGGAGCCCGCCGTGACCCTTCGGCAACTC 6721435 28 100.0 33 ............................ TCCCCTGAAAGGTGGCCGCCTGGTCGATCTTGA 6721496 28 100.0 33 ............................ GGAGCGGAACCGCAATGCTTGCCAACAGGGTAG 6721557 28 100.0 33 ............................ CGGCTTCGATGGGTTGAGCAAGATCCTCACCGG 6721618 28 100.0 33 ............................ CGCTGAGACGGCGGCCGGCGACCGCAGCGGAAT 6721679 28 100.0 33 ............................ CTTGAAGCGGGTCGCCGACCAGGCCGACAAGAC 6721740 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 22 28 100.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCATCGTCGCTTGACGAAACCCATAGGGACACCCCCCCGAGGCGGCCGAGTTGGCGAGCCTGGACTTGACCATGCTCCTCGTCACGACCGAGTGACGCAGCAAATCCGCCGTGCGAGAACTACTCACCCAACAAGGCATCATCACCGTAGAAATTGGCTCGCTACATCTACTACGAACGCCTCCACACCGCTTGCCCGACATTTCCGGGGCCGGTAGTCGGCCGCCGATCGAGGAAGAGAGACGTGATTACACCAGCTTTTCGGAACAACTCGGACGCCACACTGAGCTGATCACCCATCAACCGCCACATTGGATGGGGCGTAAGTCCCGTACGACCCGAGCCGACACCACCGACGCAACACTCGCCACCGACACCCTGCTCACGCACCCCGCTAGGCTGAACTCAGCACCTCATCGCCTAGGTCCGGAAGGGACGATCTTGCAGGACCTAGTGAATGAAAACTGCCCTGTTGATCTCTAGAGCTGCAGGTCAGCAAGT # Right flank : CGGACCCGTACGCCAGCTGGGCCTGCCCCGTTTTGACGGACATCCAAGATCAGGGGACCTGGGGTCTCCGGGAGGATGTCCATCATCATGGAGAGCATGGGGAAGAAGCGGCCGCGGCCTCGGCGTTCGTTCACGCCGGAGTTCAAGGCCGAGATCGTCGAGTTGTGCCAGCGCGGTGACCGCACGCTTCGACAGGTCAGCCAGGATTTCGACCTGACCGAGACCGCGGTGCGTGACTGGGTCAAGCAGGCCGAACTCGACACCGGCGTCCGCGCCGACGGGCTGACCACCGGCGAACGAGACGAGCTCGCGCAGTTGAGGCGGGAGAACCGCAGGTTGCGCGAGGACGTGGACATCCTCAAGCGGGCGACGGCTTTCTTCGCGAAGGAGACCCGGTGAACGTGCACCCGTTCATCGAGGCGGAGCGAGCCGGCAAACACAACGTCAAGCGTGCGTGTGAGCTGCTCGAGGTCTCCAGGTCCGCCTACTACCAGCGCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 6723125-6724312 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000002.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6723125 28 100.0 33 ............................ GGTCCTCCGGCCGGACTCGGCAGGCAAGGACGA 6723186 28 100.0 33 ............................ GCCCTCGACGCCGTCCGCTGGCCCGCCGCCCAG 6723247 28 100.0 33 ............................ CGGCATCGGCGCCCGGGTGCGGGAGGACTGGGT 6723308 28 100.0 33 ............................ CGATGTCCGCAACGTGTTCTACGCCGGCAAGGC 6723369 28 100.0 33 ............................ GGTGCGGGTGCCGTCATCGCTGCTGCGCCGTCC 6723430 28 100.0 33 ............................ GTCGGACATGAAGAAGGGGCCGGCAGTGGGAGT 6723491 28 100.0 33 ............................ GGACTGATCAAGGTTTTGGTCGGCTACCGGCTC 6723552 28 100.0 33 ............................ CACCGAGGCCGCGCCAGTAGCCGGCGTGGGCGA 6723613 28 100.0 33 ............................ CGGGGATGACCAGCTCCGCCAGCTCATCCTGGC 6723674 28 100.0 33 ............................ CTACGCCAGCGGCGGCGCGGTCTACGTCAACGC 6723735 28 100.0 33 ............................ GTGCCTGCTCGACTGCTACGTCAGCGGTAATAG 6723796 28 100.0 33 ............................ CGGCGAGTCTCCGCCCTTGACGATCCAGCGCAT 6723857 28 100.0 33 ............................ CGCCTGCCGCATTGCCGGCACCGCCCTCACCGG 6723918 28 100.0 33 ............................ ACCGCTTTCCTCTGTCGCTTGTCGTACCACACC 6723979 28 100.0 33 ............................ CACGCTCAGCGGTACATTGACTCACTTAACTGA 6724040 28 100.0 33 ............................ CCGCGGGGTGACGACGGCCGGCTGGATGATGGG 6724101 28 100.0 33 ............................ GGGGGACAGAGGGGCCGAAGGCCCCATTACCCC 6724162 28 100.0 33 ............................ TGATCGCCGTCAAGTTCGACCGGCCGTGCTCGG 6724223 28 100.0 33 ............................ CGGCATCGTCTGGGCGGTCCGCCGGATCACCGC 6724284 27 75.0 0 ..................T.AAC.GC.- | TC [6724304] Deletion [6724311] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACCTGGCTTCACGCCGCATCGTCGGCTGGGCCATCGCCGACCACCTCAAAACCGACCTGATCGACGCCGCTCTCACCGACGCCCTCGTGCGGCGCCGACCCACGTCTGGACTGGTCTTCCACTCGGATCGCGGCGCCCAATACAGCAGCGCCCAGCACGCCCGCCTCGCGCAACGTCACGGCATCCGCCTGTCCGTCGGACGGCGCGGGCAGTGCTGGGACAACGCGGTCGCCGAATCGTTCTTCTCCACCATCAAGACAGAACTGCTGCACCGCCAGCCATGGCCCACCCATCAAGCCGCCCACCAAGCCATATTCGAGTACATCGAAGGGTGGTACAACACCCGCCGCCGGCACTCGACCCTGGGCTACCTCAGCCCCGCCGCCTTCGAAGCCACCGGCCCGCACCTGCAACCAGCCGTCCAGGCAGCCTGACTAAGATCAACACATTGACCCTGTCCGTCGAAACGGGTCAAGCCCAAGCATCCTGCCCAAGACCAC # Right flank : CAATCAGATCTCCCCGTAGGCGGCCAGTAGTTTTCCCCGCTGGCGGCCATGGTTTCTCCCCAGTGGCGGCCAGATAGTTCCCCGCCTGTGGGGTGGTGCTGGGGTCAGTGCAAGGCTTTGACGCCCTGTCCGGCGGTGGCTTGGTTGAACCGGTAGCTGTCACCCTGGGTCACGACGACGTGGGCGTGGTGCAGGAGTCGGTCGACGGTGGCGGTGGCCAGGGTCTTGGGCATGATCTCGTCGAAACCGGACGGGTGCAGGTTCGAGCTGACCGCGAGGCTGCGGCGTTCGTAGGCGGCGTCGACGAGGCGGTAGAACCCTTCGGCGGCGTCCGGGGAGACCGGTAGCAGGCCGATGTCGTCGATGATGATCAGGTCGGTGCGGATCAGTCTGGCCATGGCTCGGGCGACGGAGTCGTCGGGGCGGTGGCGGCGGACCATGACGCCGAGGTCTTCGATGGTGAACCAGGCGACGGTCATGCCGGCCTCGACGGCGGCTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 6726825-6732529 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000002.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 6726825 28 85.7 33 ...GC.G....A................ CATGGCACCACCCAGCAAGGGGCTCCGGGGAAG A [6726835] 6726887 28 100.0 33 ............................ CTGCACCACCTGCATCTGCAACCCCTGCATGGA 6726948 28 100.0 33 ............................ GCGGTGGCTGGAGGCGTACGAGCGGGACGAGAG 6727009 28 100.0 33 ............................ GAAACCCAAGCCGGTCAAGAAGGCGGCTGGGCG 6727070 28 100.0 33 ............................ GTCGGCGCGGGCGAGGAAGTCGTTGGCGATGGC 6727131 28 100.0 33 ............................ CGATGACCGACACGAGCGGTGACATGTCGAACG 6727192 28 100.0 33 ............................ CACACCGACCGATCGCACGGACTCGGCCGCCTC 6727253 28 100.0 33 ............................ GTCGGAGGTCCGTACGGCCATCGCGTCGCAGCA 6727314 28 100.0 33 ............................ CGACGTCACGCCCTGGTCGACGAACCGGGCGTA 6727375 28 100.0 33 ............................ CGTGTGGGAAGGCGCGGTCCGGAGCAGCAAGAC 6727436 28 100.0 33 ............................ CTGGGTCGCCCACTGCAACATGGCGTTCGTGCG 6727497 28 100.0 33 ............................ TGATGGTCAACGAGCTCGCCGGTGCAGGCGGAC 6727558 28 100.0 33 ............................ TCAACGACCCGGGTGCCAGACGAGGCAGCTCCC 6727619 28 100.0 33 ............................ CTGGTGGAGGACCACGGCAATCTGCTGGCCTAC 6727680 28 100.0 33 ............................ CGCGGCGAGCAGCTCGTCGGCGTCCTTCTCCAA 6727741 28 100.0 33 ............................ CATGCGCCGCGCCCACTCCATCTGCCAGTGGTA 6727802 28 100.0 33 ............................ AGACCCGACCGGCAACGCCGTCCTCGTCACCCT 6727863 28 100.0 33 ............................ CGAATCCGGCGACACGGTCCTTGCCGTCGGGGG 6727924 28 100.0 33 ............................ CATCCGTGCCGTACGGGGTCAGGCGCGGCTTGA 6727985 28 100.0 33 ............................ CGTCCTGAGCGAGACGCTCACCCTCGCCCGGAC 6728046 28 100.0 33 ............................ CTCGAGTTCGAGTTCTTCCTCGCCGACCGGTTG 6728107 28 100.0 33 ............................ GGGCGCCGCGGCCGGCGAGATCGGCAGGGTGCT 6728168 28 100.0 33 ............................ CGAGGCGCAGGGGCCGATCAACGACCAGGGCTG 6728229 28 100.0 34 ............................ CGCCTTCCACTTCTTGCGGGGCATCGCCCGCAGC 6728291 28 100.0 33 ............................ CAGGCAACATGCCGCTATCCCGGTTGCGCGTTG 6728352 28 100.0 33 ............................ GAACCCGCCAACGGCAGCCGCCGCGCCAGCGAG 6728413 28 100.0 33 ............................ CGCCTTGTTGGTCTTCTCGCCGTCGGCGACGTA 6728474 28 100.0 33 ............................ CCCCGATGGTGTACGGCGAGGGCGAGACGTGGA 6728535 28 100.0 33 ............................ CGCCGCCGGCTCGACGCCGAGCACCACGCTGCT 6728596 28 100.0 33 ............................ GGTGCGCGCCTCGCGGACGTTGCACGAGCGGCA 6728657 28 100.0 33 ............................ TCGGGTCTTTGCCCGGGCGCGCGGCGACTCCGT 6728718 28 100.0 35 ............................ ACGATCGCCCCGTTGCAGGAGCCGGTCGAGGTCGC 6728781 28 100.0 33 ............................ CTGGGCCGGCGACGCCACCGCCGAGTACGCCGT 6728842 28 100.0 33 ............................ CTTCGGGTGACGCTCCATGGGTGTCACCCCCCG 6728903 28 100.0 33 ............................ CTCTTCACTCGCGCATCGCCTTGCGCGTCATGA 6728964 28 100.0 33 ............................ GTAGAGCTGGGTGTTGGCGGCGGTCTTCACCGT 6729025 28 100.0 33 ............................ TCGCGGGACGCGACCGAGCCGTCACCGTAGATC 6729086 28 100.0 33 ............................ TGCCCTGGTACGCCTCGGGCTTGCCCTGCTTGT 6729147 28 100.0 33 ............................ CGCGCTGCTCGTGCACCGCGTGCCTTCTGCTGC 6729208 28 100.0 33 ............................ CACGTCGTGTGTGGATAATGCCAGTTATCCACA 6729269 28 100.0 33 ............................ CACCTGGGCAAAGCTCCTGGGGGTGTGACGGTG 6729330 28 100.0 33 ............................ CATCAATCTCCCGTGGCCGGCCCCCGGCCGGCC 6729391 28 100.0 33 ............................ CGTTGAACAGTTCTTCCGTGGCTAGTCCGGTTG 6729452 28 100.0 33 ............................ TGTCCACCTAAGTTGATCGCCGGCCGCCCACGC 6729513 28 100.0 33 ............................ CCGCCGTCTTTGCCCGCTGATCCGGTCCGCAGA 6729574 28 100.0 33 ............................ CTGGCGGCGGGCCTCCAGCACGATCGTCTGTCC 6729635 28 100.0 33 ............................ CCGCTCGTACTCGTCGCCGAGCGCGCCGGCGTA 6729696 28 100.0 33 ............................ CCCCGGGTGGCCTGCCTCGACCCGGGCCTGTCC 6729757 28 100.0 33 ............................ CAAGGCCGAGGCGGTGTGGCCGATTGCCGAACT 6729818 28 100.0 33 ............................ CGCGGCCACGGACACCGTGAGGACGCTCAGCGA 6729879 28 100.0 33 ............................ CAGGGCCACGCCGGCCGCGTCGCGGGCAATCGG 6729940 28 100.0 33 ............................ GGTCACGGCGCGCGAAGTCACCGCCGACCAGCT 6730001 28 100.0 33 ............................ CGCGGGACCAGCGACGCTCGCCAAGATGCGGAC 6730062 28 100.0 33 ............................ CTCCCCGCGGACACGAGGCCACCGAAGAACCAC 6730123 28 100.0 33 ............................ CACCGCGCCGGCGATGCCCATGAAGTTCTCGGC 6730184 28 100.0 33 ............................ GTACGAGGAGACGGGCAGCGTCAAGGCCGCGAA 6730245 28 100.0 33 ............................ CACGTTCACGGCCGTGAGGCCGGAGAAGTGACT 6730306 28 100.0 33 ............................ CGGGCAGGTCAACGTCGTCAGGCCACACGGTCA 6730367 28 100.0 33 ............................ CCCCGAGGTCACGTCGACACACCGACCAACGGT 6730428 28 100.0 33 ............................ GGTGGCGCACGACCCGGGCGCGGCCCGCCCGGC 6730489 28 100.0 33 ............................ AGAGGCGGAGACGGTCTACATGTACGCCCAGGC 6730550 28 100.0 33 ............................ GCCACAGACCGGCTGCCGCGAGCAGGGCCGCCC 6730611 28 100.0 33 ............................ CTCGCGGCGATCCGGACTGGCGTCCGCAACCAA 6730672 28 100.0 33 ............................ CGGTCAACATGTGCCGCGACCGGCCCCATTGGA 6730733 28 100.0 33 ............................ CGGAGGAGCGCGCAAGGGCGGCGGAGCAGGAGC 6730794 28 100.0 33 ............................ TGGGCGATCCGGCAGGCTGCGGAATGAGTTCCG 6730855 28 100.0 33 ............................ CACGATGGCCGCCGAGGCCGGCAAGATCCAGAT 6730916 28 100.0 33 ............................ GTCGAGATCGCGGTGGTGCGGGGCACGGCCCTC 6730977 28 100.0 33 ............................ CACGCTGCGCACCCAGCGGCCGCCGGTCTTGGC 6731038 28 100.0 33 ............................ GTTGTTCGGCCGGTGAGCGGCTGGACTAACGAC 6731099 28 100.0 33 ............................ TCGCGCAGAATGAAGATGAGATTCCGCACCGGG 6731160 28 100.0 33 ............................ GGCCGGTGCCGACGCCCGGGCCCGGCGGTACCC 6731221 28 100.0 33 ............................ CTCGGCCTGGCCGGCCTTGTCGAGGCCGTTGAC 6731282 28 100.0 34 ............................ ACGCGGCAGCCCACGCCTCGCGGTTGCGCAGTCG 6731344 28 100.0 33 ............................ GCCGGCCACCGCCAGATACTGCGCTGCCTCGTC 6731405 28 100.0 33 ............................ CCGGCCCGCCCAGTAGGCCCGGCCGACGTCAAC 6731466 28 100.0 33 ............................ CATGATGTCGCGAAACGCCTGAATAGCCGGGGA 6731527 28 100.0 33 ............................ CGCGATTGCCGGGCTGTGGAATCGGACCGTGGG 6731588 28 100.0 33 ............................ CGACAACGTCAACGCCCGTAAGCTGCGGAAACT 6731649 28 100.0 33 ............................ GTCCAGGGCGAGACGCTTCGTTCGATCCGCTCT 6731710 28 100.0 33 ............................ GCAGACCGGCCGGCGCCACTTCGAGGCCCCCGA 6731771 28 100.0 33 ............................ GTCGTTAGGGAATCGCCCAGCCGCGCCGTAGTG 6731832 28 100.0 33 ............................ GACCTCGGCGGCCCCGGCCGCCACGAAGAGCAC 6731893 28 100.0 33 ............................ TGTTGTTGTCGACGATGACCGGGGTGCCGTTGG 6731954 28 100.0 33 ............................ CGTGCTGCCGCCAATGCCGGTCACATCCGTGTA 6732015 28 100.0 33 ............................ CGACTCGGTGATCGTGGGGCGGGCGGCGTCTGG 6732076 28 100.0 33 ............................ GTCGGCCAAGTAGCGGGTGCATCCGGGCTTGTG 6732137 28 100.0 33 ............................ GGTCACCCACCGGCGCGGCGCCGCCAAGCTGGC 6732198 28 100.0 33 ............................ GTCCAAGACCCCGCCCGAGGCGGCGCGCCACGA 6732259 28 100.0 33 ............................ CGCAACAGGGGCAGACGCCCGTAGCGGATGCCT 6732320 28 100.0 33 ............................ GTTCTCCCCCGGTCTGATCCCGGTCCCGACACA 6732381 28 100.0 33 ............................ CGAAGCCGTCTTCTCGCTGTTGGTCGCCCTTCA 6732442 28 100.0 33 ............................ CGGTCTACATCTACCGCGACCGGCCCCATTGGA 6732503 27 96.4 0 .................-.......... | ========== ====== ====== ====== ============================ =================================== ================== 94 28 99.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACTGAAGCCACAAACCGGGCTCGGGGATCCACGGGCGGAACACCCGTCGCTGCCCGGCCTGCCAGGACTTCTTCACCGCCGCGACCGCCCGGCGGGTGGTGCGCTCTCCGCCGGCGAAGCCCATCGTGGTGATCCGCCGGTGCACCACATCGGCGCGGACCCGGCCACCCGAGCGGGCCACCAACTCCTCGATCTTGTCCATGAACTCGTCGATCGGCCGAGCCCGCTGGGTCCGCTCCTCGGGGCTGCGTCCCTCGGCCCGCAACTTCACATACCGGGCCACGGTGTGGTGATCACACCCGGCCAGCTCGGCCGCCGCACGGTAACTACCCGTGAGGTCGTATGCCTCCAAAATTTCCACGATCTCCCTGCCGCGTTTCACGCCGCCGACCCTCGCCGACCAGCGTCTCGTCATGATCAGCGGGGAGGTATCTGGCCGTCCACGGGGAGAACCCTGGCCATCAGCGGGGCGGTAAATGGCCGCCTATGGGGATCTTTCA # Right flank : CCAGGTGGCGGGCCGCAGTGCACGGCGTCAGTGCTGGGCCGGCTGCGGAAGAACTCCCGGTCCCAGGCGGCCTGGACCTGGGGCCGACGGGCAGGCAGACGCAGTGTCTGCAGGTCGTCAGCGAGCAGGCCGTAGTCCTATCCAGCCGATTGATCGGTCTTCATGATCAGATTCCGCACCAGCACGGGGCATGATCACATCTCATCTAACAGGAGACGCTATAGAAATCAACTACTTCTTTTTCCTTCGCTTTGCGTGGGGATCGTCGGCACTCCGTCGCTGGCTTCTGGGACCCGGCGGCCAAACCTGCGGCGTTTGGAGGCTTTGCTCCACCCGGAGGACAGCGCAGGGTTGTACGACTTCCGTTCTGTCGGCCGGCGCATCAACGTGACCCCGTCAAAATCTACGGGTTCCCAGTGGTGGTCGTGCACCTTGAAGGAAAGCCGCTGCTCGCCCGGCTGTTGATAGACGAGCAGCGCCCGGCCCGGTCCGGCCATTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 5 6742497-6743378 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000002.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6742497 28 100.0 33 ............................ AAGGGATAAGAAAAAGGCCCCCGAAAGCTCGGG 6742558 28 100.0 33 ............................ CGAGGCGCAGGATGGCGTCATCACCTTTTCGTT 6742619 28 100.0 33 ............................ CTTGACCTCGTGCTGGTCGTCGCTGCCCCACTT 6742680 28 100.0 33 ............................ GGTGGAGCAGGTGATCGACCGCTATGACGCTGC 6742741 28 100.0 33 ............................ GGCGCAGCGGGAGAACTGGAAGGCACGCAAGCG 6742802 28 100.0 33 ............................ GGTGGGCCGCTCGAAGGCGAAACCAACGACCAG 6742863 28 100.0 33 ............................ ATGAGGTGGGCGACCTGCGCGCGGTTGAAGGTC 6742924 28 100.0 33 ............................ CTCGAAGCCGGGCGACACCCTGTCGGAGCACGT 6742985 28 100.0 33 ............................ CCGCTCGCGGGCGGATCGGCCATGGCCGGCCTG 6743046 28 100.0 33 ............................ CCGCCGCCTGCATTTCCGCCTCGGTGCTGGCGT 6743107 28 100.0 33 ............................ GGCACAGTCATCATCGACCGCACCAGCCGGTAC 6743168 28 100.0 33 ............................ ACGTCCGTAGTCGGCGATGCTGGTCGAATCCTC 6743229 28 100.0 33 ............................ CCCGGGTGAGGGCCTGTCGATGTACACCCCGGT 6743290 28 100.0 33 ............................ GGCGTGGGGACACGACATCACGGGCGTGTGGAA 6743351 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GATGCGCCCGTCGTCAAAGCCGCCGGGAAGCGGCCCGGCGATGTGCTGCCGCACCGTGGCCGGCAGCCAGACGTCCCACAAGAGCCCGGCCACATCGGAGCTGTCAGCGAAGTGCCGGAACAGCGGCAGCCAGACCAACCCTCGGTCGCGGTTCGTTTTACCCCAGACGAGACGCGCAGTCTCGCTAAGGCCACCCCAATCGGTCACGCCAGACAGAAAACCAGAGGGGTGTGACAATACGAACCACCTCAGCATCTACCGTGAAATGGTGTTCGCACCACCCGTAGAGGTCCTACGGGCGATCCGCTGCCCCCAACCTCACGTCTACGTCCAATGCGCGTTACGCGCGTGCAATTCACGAACCCCAGGAGCATGACCGACCGATAGGCTGACCCGAGCGGACAGCACCAACCCCCGCGCGATCCACACGATCGGTGATCTTGGGAGCCAAAGTGAACAAAAACCAGAAAGTTGATCTATAGCGCCACAGGTCAGAAAGC # Right flank : CCTGTAGTGGGTACCTAAGGGACGTCTCGTAACTGGGTGAAGGCGTTGCCTGGGACGGGGTCGGCGGTCAGCCGGCGAGGATGATGTTGTGGAGGTTGGCGATGCCGGAAGCGGCGTCGGCCAATGTGTGGGCGGCGCGGCGGTAGTCGCGCAGGATCTTGAAGCACTTCATCCTGGCCAGGGCGTGTTCGACCCCCGCTCGGACGGTGCGGTGTTCGACGTTGAGGGCTTCCTTCCAGGTCGGCAGCGAGCTGCCGTCGGCGGGCTTGCGGTACGGCATGATCACCTCGGGGTTACCTCGGTAGCCGCCGTCGGCCATCACCGGCCGCCCGTTCAGCTTCTGGTCGATGTCTGAGGTGCGGTAGACGATCGTGTCGTTGCGGTTGCCCGGCTGCGGATCGCCAACGGCGATGACCAGGCGGGTGCTGGCGTCGATGGCGACCTGCAGGTTCGTCGAGTAGCGGTAGTTCTTGCTGCGGGCGGCCAGGCGGTGATCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 6 6744292-6746700 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIC01000002.1 Micromonospora peucetia strain DSM 43363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6744292 28 100.0 33 ............................ CCGGCTGGCGCAGATCGAGCGCCGCCGGCAGGA 6744353 28 100.0 33 ............................ CTCGCGGGACGCCCTGGCGGAGGTGCGGTCGCT 6744414 28 100.0 33 ............................ CCGGAGTGGTCGTGTCGGCCCCCTCGCCGACCG 6744475 28 100.0 33 ............................ CGGGGGGCCCGCCGTGGTCTACCGCGCCAACCC 6744536 28 100.0 33 ............................ TGTCAATGACGGTCGATTCGGGCTGAAACCCTC 6744597 28 100.0 33 ............................ CTCGCGGGGCTGGTGGGTCAGGTGCTGTCCACC 6744658 28 100.0 33 ............................ GTCGGGGTGTGTGGCGACGTGAACGGGTGCGGT 6744719 28 100.0 33 ............................ GGTCAGGCCGAGCTTGACGGCGATCTCGGAGAC 6744780 28 100.0 33 ............................ GTACCCGCAGCCCGTCGACGAGCTGCTGCCGAA 6744841 28 100.0 33 ............................ GTGGGCACGTGCCCTCAACCACCGCATCGTTCT 6744902 28 100.0 33 ............................ CAGCGACAAGACCCGCCGACCCACCGGCCGCAC 6744963 28 100.0 33 ............................ CTGGTGGAGGACCACGGCAATCTGCTGGCCTAC 6745024 28 100.0 33 ............................ GGCCGTCCGGGCGGCCGTCGAGGACGGCATTTT 6745085 28 100.0 33 ............................ CGCCGTGAGTGTGCCGATCCCCCTGGCGGTGGC 6745146 28 100.0 33 ............................ CGAGATCACGGCCTGCCGCTCCGCCCGCAGGCC 6745207 28 100.0 33 ............................ GCCGTCCCGCTTGTGCCAGATACGGCCGTTGTA 6745268 28 100.0 33 ............................ CGTCATCAACCCGCTTGTGCGGCTGGGTGGTGA 6745329 28 100.0 33 ............................ CGCGTCGAAGGCCCCGTTCAGGGTCGGCCCGGC 6745390 28 100.0 33 ............................ CATGCCGCCACTGGGGGCGTCGGGCGCGCTCGC 6745451 28 100.0 33 ............................ GGCCGTCCGGGCGGCCGTCGAGGACGGCATTTT 6745512 28 100.0 33 ............................ CGCCGTGAGTGTGCCGATCCCCCTGGCGGTGGC 6745573 28 100.0 33 ............................ CCGGACGCCCCGCACGCCGTGAAGACGCCGGTG 6745634 28 100.0 33 ............................ CTCGTCGGCGCGCTCCTTGGCCCGCGTGATGCC 6745695 28 100.0 33 ............................ CGAGATCACGGCCTGCCGCTCCGCCCGCAGGCC 6745756 28 100.0 33 ............................ GCCGTCCCGCTTGTGCCAGATACGGCCGTTGTA 6745817 28 100.0 33 ............................ CGTCATCAACCCGCTTGTGCGGCTGGGTGGTGA 6745878 28 100.0 33 ............................ CGCGTCGAAGGCCCCGTTCAGGGTCGGCTCGGC 6745939 28 100.0 33 ............................ CATGCCGCCACTGGGGGCGTCGGGCGCGCTCGC 6746000 28 100.0 34 ............................ CGGCACCACCCACCCCACCGGACGGTCGTGGGAA 6746062 28 92.9 33 .............G..G........... GACGCCATCCGTCCGGCCGCATGGGAGCAACAA 6746123 28 100.0 33 ............................ CACCCTCTGCGTCAACCCGTGGCACCTGGAGCC 6746184 28 100.0 33 ............................ GCAGGGACACGCGCGGATGGCTGAGCGGTTCGT 6746245 28 100.0 33 ............................ GTCGGCTATCCGCTGGTCGCGGGGACTTCGGGC G [6746267] 6746307 28 100.0 33 ............................ CACCGAGGCGGGTCGCAAGAACATGGCCATGCT 6746368 28 96.4 33 ................A........... CTGTTCAGGCCCGGCCCGGTGTATGCCCGCTAC 6746429 28 100.0 33 ............................ CTCCCGCCGACGCCCCGCCGTGTCGTGGTCCTG 6746490 28 100.0 33 ............................ CTCGCGTTGGATGTTGCGCCACAGATCGAAGTC 6746551 28 100.0 33 ............................ CGCCCACGGGTTGGCCTGCGGATGCCGTTCCCC 6746612 28 100.0 33 ............................ GGCCTGCAAGGAATCCAGCAGCCCGGCCGGTGA 6746673 28 96.4 0 ...............T............ | ========== ====== ====== ====== ============================ ================================== ================== 40 28 99.6 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCAGGCGGGTGCTGGCGTCGATGGCGACCTGCAGGTTCGTCGAGTAGCGGTAGTTCTTGCTGCGGGCGGCCAGGCGGTGATCGCGGGTGGGGATCAGGGTGCCGTCGACGATGGCGATCTGTTCGACCGGCCGTTTACGCACTGGTGCCAGGGCCAGTAGCGGCGCGAGGGTGTCGATGACCCGGTGCGCCGCGGAGTGCGACACCCCGAACAGCGGGCCGATCTGCCGCATCGTCAGGTTCGTACGCCAGTAGGCGGCCACCAGCAACACCCGATCCGGGAGGTCGAGGGCCCACTGCCGGCCCGGCCGGCCGTCGGCGATGCCGTCACCGCCGCGCTCGGCGACCAGCCGGACCAGCCTGCGGAACTGGGCGGGCTGCAACCCGGTGAACGGAAAGACCCACTCCGGACGGGCTGCCGAGATCACCTGCACCCCACCATGATCCACGATGGACGCGAGACCCAGTTACGAGACGTCCCTTAGGCAGGCTGACAAGCCC # Right flank : CCACACCAACCACGTTCACATATCCGCCTACCAATTACTCTCCGCGCCCGCCACAACCGTCCGCCGCCGGCAGGAGTAGCCAGGTGCGCTGGGATCTCCCCGGTATCAGACCTTCGCATGCAGCGACAGGATCGCCTTGTGGAACCTGTCCAGGCGACGGGCATGCTTGGGCCCGATGCGCGGCACTCACCCTCCCGACAGCAGGGCATTCTCCATGAGTTCGGCTGCTCTTCGTTCGGCGTCCGGAAGGACGTGGGTGTAGACCATTCTGGTCATCCGACCCTCGGCGTGACCGAGCCGATGTTGCATCACGTGCTCAGGCACGCCCCCATCCGCCCCGGCGGTAGCCGACGTGTGACGCGCATCGTGCAAAGCAATCACAGGCAGGCCTGCCGCCCGGCACGCGAGCTCCCACTTGTCGGTGAAGTACTTCGGGTAGTACGGCTTGCCATCCTCCCGGCAGAAGACGTAGCCCAGATCCTGATAGGCAATGCCCGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //