Array 1 317063-318985 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB903963.1 Nonomuraea coxensis DSM 45129 A3G7DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 317063 30 96.7 31 .............................G AGGCGGCTGACAGCTTCGCGGGCGTGGACTG 317124 30 96.7 31 .............................G ACGGTTTACCAGGAACAACAGCACAGAGCAA 317185 30 100.0 32 .............................. GGCCCGGCCCCTTGCCCGGCTCGGTCCACTCC 317247 30 96.7 31 .............................A GTATAGAGCCCAGAGCCGCTCTAGAGCAGTC 317308 30 100.0 31 .............................. GGCACTCGGCATGGATGGCGCTCCAGAAGGC 317369 30 100.0 31 .............................. GCCGCCATACGAGTACGGCGATGCGCGAGCT 317430 30 96.7 31 .............................A TGCGCCGGGCCGGCGGCAGGTCGTGGGTGCC 317491 30 96.7 31 .............................T CGACCAGCTGATCGAGGCCCACATCCTCAAC 317552 30 96.7 31 .............................A GCGACGGGACCGTGGTCGGCTGCCGGGTGCT 317613 30 96.7 31 .C............................ GTCAGCTCCGACAGACGCAACCGCAGCTCGT 317674 30 96.7 31 .............................A AGCTGACCTCTTTGGTGTAGGCGTAGAAGCC 317735 30 100.0 31 .............................. CGGTCAACTGCGCCGGGGTCATGGGCAAGGG 317796 30 96.7 31 .............................T GGTCGGCCGCCTGGCCGCCGGTGAAGTCGAT 317857 30 96.7 31 .............................A TGTCCGGCCTGCGTGACAGATGGAAGACCTC 317918 30 100.0 31 .............................. GGGCGTACTCCTCGGTGTACATCAGGAACGT 317979 30 96.7 31 .............................G ATCATGATGTCCTCATCGCCCCATGACGCAG 318040 30 96.7 32 .............................G CAGGGAGAGTGCGTTTAGGGAATGGCGGCCCT 318102 30 96.7 31 .............................G GTGCTAGCGGAAGCAGTAGCCATGATGAATT 318163 30 96.7 31 ............................T. GGATGTGCTCAAGGTGGCGGCCCTATGCCAG 318224 30 96.7 31 .............................T TAGTGGTGGCCACCATCGAGTCGGTCTCGCC 318285 30 93.3 30 ............................GT GCCTTCGACGGCGAACCGTTGGCTGGTCGA 318345 30 96.7 32 .............................T CGGCCCCTCTAGCGTGGTGCTCACACCGCGCA 318407 30 100.0 31 .............................. GTATTGAGACCAGGCGGACCCCAGTCCGCCG 318468 30 96.7 31 .............................A TCCAGGCGGGCTCCTCCCAGATCGAACGCCA 318529 30 96.7 31 .............................A GGCAGTCGAAGTCCTCCCAGTCCCACAGCGG 318590 30 93.3 31 .................C...........T GGGCGCGCTGGTCCGACGGCGGCGCCGTGAC 318651 30 100.0 31 .............................. ACGCGCCGCCGATGTCACCTGACCGCCACGC 318712 30 96.7 31 .............................G AGCGTGGCCACCGCGAGTTCGAGGTGACGGC 318773 30 96.7 31 .............................G TCCTCGGCTCGGCAAGAGGATGGGGAGGACC 318834 30 93.3 32 .................C...........T GCCGGCCCGCCTTCCGGACCGACTTCGACTTG 318896 30 93.3 31 A................A............ GTGCGGCGGCGCGGACGCGAGCCGCAGCCTT 318957 29 83.3 0 .........TT............-.A..T. | ========== ====== ====== ====== ============================== ================================ ================== 32 30 96.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AACGGGTCGTCGCCGAGCCAGCGCTGATGAGCGTCAGCACGTCGCCGGCGGAGCCCGGCTGGGGGGTCATGCCGCCGACAATAAGGTCACCCATCTGGCAAATCAAGAGGGCAAATCGACCGAACCCCGCTGACTTCTGTCGATGACCGAACAAAGTGGGTGTTGTTGCCGTACGCGCAGAAGCCGGACACACCGGGGTCGGGGCTACAGGTTCAAGCCTTGCCGGGAACATCGTCCAAGCGCCATCGACCAGCGAAAACGTCGGGCGTCGAGGGTTTTCACGTCTCCGGCGATGCATGGCTGCGACTGATCGCCTGCGGTCGGCTATGCCAGATACGTGCGTACGGCGGATACCGTGCGACACTCTGTGCAGCCGCTACTGCGGCAAGGTGGGTGGCATCGCCATCACGTACGGGCTGCTTGACACGTCCAGAATGTCCGAACCCAAGAAAGTGCTCAGAAACGGCCTCTGTCGCGGACAAACGCGCAGGTCATCAAGA # Right flank : CACCAGTGCGTCGTCAATGATGACGCGCTAGACGATTCCGCAGGTTCGAGGTTCCGAGGGCCTTACCTACTCGTTCACCGCAGATCTTCCCTCCGTTCTGAACGGCGCCAGCGTCACCGGGCCTCACCAGTAAGGAGCATCTGCCAGAGGCGTTCCGCCTTGCCCCGCGTCCAAGGACCGGCGTACACGACCCTGCAAGGAGTCGTCTGGTGCGTCCGGCGGACCATGTATGCACCGCCGCCACTGATGAGCTCGTAGACGACCACACAGCACGAGCACGTATGGCCGAGAACTCGCTGACGACCCTGCTGATTCTTGAGCCGCTCGGCCGGCGCCCACGAGATCAGGACAGACGGGGCCACCACACGGCGGGAAGGATGTGAGGACACTTGCGGACAGGGCCAGTCATCGTCGTCACGGTCTGGCAGCTTGGCCATTAAGACAGCCTCCTACCTTGCGATGTGGCAGCGTTTAGGCACGTAGCTTCTTATGAGCATATG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320308-319973 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB903963.1 Nonomuraea coxensis DSM 45129 A3G7DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 320307 30 100.0 31 .............................. CGATCAGGCCCCGCATAGAAATGCCGGCGGT 320246 30 100.0 31 .............................. AGGTCACCTCGGCCAAGCTGGAGGCCGTCCT 320185 30 96.7 31 .............................G ACTCCTACCAGGCGGAGCCGAACACGTTCGT 320124 30 93.3 31 ........T....................T CCTCATGCCCCGGCAACGGGCTTTCGACGAA 320063 30 93.3 31 ....C...........T............. CGAGCTTGGACCCGGTGTATGCCGCCAACCT 320002 30 86.7 0 .......TG...............T....T | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AACTACGCCGACGAGGTGCCCTGGTGACCGTCATCGTGCTCACGCGGTGCCCTGCCGGCCTGCGGGGGTTTCTGACGCGCTGGCTCATGGAGATCGCTCCCGGCGTCTTCATCGGTGGCCCATCGGCTCGCGTGCGAGAGCACCTTTGGCTGCAGGTCCAGCAGTATGCGGATACAGGGCGAGCGCTCCTCGCGTACACCACGGACAACGAGCAAGGTTTCGCCTTCGAGACCCATGACCACAAGTGGCACCCCATCGACCATGAAGGCCTGATCCTGCTACGCCGCCCGAAGGAACTGCAGGAACGCGTCCCGGAAGCGCCTCGAAACTGGAGCAAGGCGGCCAAGCGTCGTCGCTATGGGCAGCGTTGATCAGAGTCCCGCTTCGGTGGTGTCTGGGAGCGGTGCGAACGTAGTCATAGGGGCGTGTGGGCAATATGTCCGAGTCGATGAAAGTGCTCGAAAAGAGGCGCAACGCGAAACATCGCTGCAGGTCAGAGA # Right flank : CGTCCATCTCAGCGCTCAGGGTTTCTTGCTTGCTGAGAGTTGTCCCAGACGAGAGTTGTGCGGTCGGCTGCCAGGACGCGCTCGCGCTTACGCGGTTGCTTGATTACGAAAACCGGAACGCCCTCGGGGATGTTCAGTTCCTTTCGCTCCTCCGGGGACGGCATGCGGGCGCTGACCTCTGCCTCGCCCTCGATGACGACCCGCTCGACGGGTAGCTGGGGCCGGACGTGCGAGCCCTCACGCTTCACGGTGACAATCAGTCCTTCGCTCCGCAGCACCCCGAGCGCCTGTCGTACGGCCACCCGGCCAAGCTCGTACTGCTGCATCAGTCGCGTTTCGGAGGGGAGCGCCTGACCAGGCTTCAGCCGGCCTGATGCGATGTCCGCGCGAATGATGTCGGCGAGCTGCCGGTGCACTGGTCGATCGGAACCGAAGTCGATCACAGCAGATCATCATTACAACGCCACTACCTCATGTGCCCTTGTAGGCATATGCTCATA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 329837-331578 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB903963.1 Nonomuraea coxensis DSM 45129 A3G7DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 329837 30 96.7 31 .............................A CCCTGACCAGCGTGAAATGGATGTCCCGGAA 329898 30 93.3 31 ............................AA AGCCACCCACCTGGACGGCTATATCCCACCC 329959 30 100.0 31 .............................. TCTCGAAGTCTCCCAGGACGGTCGGATCCAC 330020 30 93.3 31 ............................TG CTCACGTCGCTAGCATCGGAAATAGCGCAGA 330081 30 100.0 31 .............................. GCCGCGCGAGCACATTGTCTGTCACGGTCCC 330142 30 96.7 31 .............................A TCGCCGGCGTGGAGCACTGCGTAACGGTCAG 330203 30 100.0 31 .............................. GCATCTTGGCGGGCATCTTGAACGGGGCCGG 330264 30 96.7 31 .............................G ACGTGATGACGGTGGTGACGCGGCCGTTGAC 330325 30 93.3 31 ..................A..........G GGGGCGCGGAGTCGATCGGCTCCCACGGGTG 330386 30 93.3 31 ............T................G TCGTGGACGTCCGGGCATGGGACCAGTGGGA 330447 30 93.3 31 ............T................G TGGGCCTCTACAAGATCGAGCAGGGCACGCT 330508 30 100.0 32 .............................. GGGCGGCGTGGCCACCGCACACCAGCGCCTCA 330570 30 96.7 31 .....T........................ ATCGGACGTGGACGAGCGAGGGCAAGGCTGC 330631 30 93.3 31 ............................AC ACCCGCGTACGACCCTGAAGGGAGTCACCGT 330692 30 93.3 31 ....................A........G GCAACAACTCGGGGGCGGGCGGCCAGGGCGG 330753 30 96.7 31 .............................A CCAGCCCGCCGCCGAGCATGACCTTGACGAT 330814 30 96.7 31 .............................A GCCACCGGTTCAGGCGGCCCGCGGTGTCGTT 330875 30 93.3 34 ..............T..............C GATGATGATGGACGACATGAGCGACCGCGAACTC 330939 30 100.0 31 .............................. ACCACCCGCACCTCAAGACGCAGACACGCGA 331000 30 93.3 31 ............................TG GTTCAGTCATCCACGCGACGTCGATCGTTCT 331061 30 96.7 31 .............................G GCAACGTGACGAGCTCCGGCCCTTCCTCGCC 331122 30 96.7 31 .............................C ATTCGGCCCACTTATCGACCTTGGTGTTCTT 331183 30 96.7 31 .........A.................... GCCGCCCTTGCGGTGGAACCGGACGCATACC 331244 30 93.3 31 ........................A....A CCTCGGGGACCACGATGCGGCCCTTGCCAAG 331305 30 90.0 31 ..............T.........A....C TCAAACCGGGCACCGGCAAGACCACGTCGGC 331366 30 86.7 31 ..........T...T.........A....A GCATCGCTGCTCCCCGAGGTGTCTCCACCTG 331427 29 83.3 31 ............-TT.........A....G TGGGGTTGCAGATCGACCTCAGCGGCTTCGT 331487 30 90.0 31 ...G..........T.........C..... CGCCCGGCGTTTCGGCATTGGCTAGACCACG 331548 30 86.7 0 ..............T.......G..G...A | G [331570] ========== ====== ====== ====== ============================== ================================== ================== 29 30 94.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : ATCGTGAGTGGTCGCCAGCCATACCGCGAGCCGCCGGCCGTCCGCCAAGCCTCCGGGGAGCCCTTCAGCGATTACCTTCTTCACTTGTATTGGCAACCACTGATCCCATAGAAGACCGGCCACTGCGCCGCTGTCAGCGAAGTGCCTCCACAACGGCAACCACCCATCGGTGTCCCGATCATGCTTCGCCCAGACAGACCTTGCCCCTTCGGACAAATCACTAAAATGGGATATTTTCGATGCCTCCTCGCTGAGCACAGGGGTCATTAAAGTGCATAGGACCGCCAAGCGAAAGACACTCCCACAGAAAAGAGCCGTAAAACGCATACGACCAGGCCAGCGGATGATGCGGAAGAAGTTGCACGACAGGCAGCGATGATGCAGCCTAGAGCGACTGGATTGCAGCTTGACTACCTAAATACCCCTTATGCCCTTTATGTCGCTTCTTATGAAAGTGCTCCAAACCGCGCCCGTCGGCTGACATCGTTGCAGGTCAGCGA # Right flank : AAGAAGCCATGGTTACGAGCCACCATGCGCTTTGCATCCTTGAGTGGCCGGAGCAGCCGGTGGTTCGGTCCATCAATTCGCCGACGGCAGCCAGCCGGCGGTAAGGGTCCACAGAGGCGGCCACGGCCATCACGCGACCTCCAGAGATGCTCACGAACCCCGAATGATCACGTGGTGGCCGTCTTCATCCGATCAGGGACTACAGCATGGCCTTCATCGAGTCGCCGGCCGACAGCACGTACGGCTGCTCCGCCATGATCGACTCCCAGTTGTCCGCGATGGCCTCCGGCGTGATGTCGTCGGTCTTCCAGCCGGGCCCCTCGGCCACGAACACCCGCGCCACCCGCCCCGCGCCGACCGTGAACACCTCGCCGCTGACCTCGCACGAGTCGTGCGTCAGGTACGCCACCAGCGCGCTCACCCGCTCCGGCGTGAACTTGGCCTCGAACTCGGCCGGCAGCAGCGACTCGGTCATCCGGGTCCAGGCGACCGGGGCGATG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //