Array 1 54-1730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLO01000038.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 115 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 176 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 237 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 298 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 359 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 420 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 481 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 542 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 603 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 664 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 725 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 786 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 847 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 908 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 969 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 1030 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 1091 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 1152 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 1213 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 1274 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 1335 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 1396 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 1457 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 1518 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 1579 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1640 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1701 29 93.1 0 A...........T................ | A [1727] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGCCAGCGGGGATAAACCGGCGGGTGAAGTTACCTCCGAGGGCTTTCACGAG # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 171265-172880 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLO01000010.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171265 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171326 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171387 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171448 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171509 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171570 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171631 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171692 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171753 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171814 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171875 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171936 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171997 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172058 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172120 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172181 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172242 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172303 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172364 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172426 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172487 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172548 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172609 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172670 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172731 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172792 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172853 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189388-190453 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLO01000010.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189388 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189449 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189510 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189571 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189632 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189693 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 189754 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 189815 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 189876 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 189937 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 189998 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190059 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190120 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190181 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190242 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190303 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190364 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190425 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCAACCATCGAACTACCCGCTTCAAAATCACCGTGTTCCCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //