Array 1 34837-34030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMM010000204.1 Serratia marcescens strain A4 Contig_204_50.7977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34836 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 34776 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 34716 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 34656 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 34596 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 34536 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 34476 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 34416 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 34356 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 34295 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 34236 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 34176 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 34116 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 34056 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44609-43318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMM010000204.1 Serratia marcescens strain A4 Contig_204_50.7977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44608 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 44548 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 44488 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 44428 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 44368 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 44308 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 44248 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 44188 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 44128 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 44068 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 44008 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 43948 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 43888 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 43828 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 43768 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 43708 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 43648 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 43588 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 43528 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 43468 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 43408 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 43348 28 96.4 0 ....................A....... | G,A,A [43321,43325,43327] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //