Array 1 94629-95754 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNX01000010.1 Salmonella enterica strain BCW_4922 NODE_10_length_220518_cov_3.80346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94629 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 94690 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 94751 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 94812 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 94873 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 94934 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 94995 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 95056 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 95117 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 95178 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 95239 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 95300 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 95361 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 95422 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 95483 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 95544 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 95605 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 95666 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 95727 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112013-114119 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNX01000010.1 Salmonella enterica strain BCW_4922 NODE_10_length_220518_cov_3.80346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112013 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 112074 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 112135 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 112196 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 112258 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 112319 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 112380 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 112441 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 112502 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 112563 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 112624 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 112685 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 112746 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 112807 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 112868 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 112929 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 112991 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 113052 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 113114 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 113175 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 113236 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 113297 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 113358 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 113419 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 113480 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 113541 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 113602 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 113663 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 113724 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 113785 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 113846 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 113907 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 113968 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 114029 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 114090 29 89.7 0 A...........TC............... | A [114116] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //