Array 1 53797-54313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRET01000009.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_9_length_249443_cov_67.2778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53797 29 100.0 32 ............................. CTGGTCTGCAGCACCAGTTCGGCACGGTGGCA 53858 29 100.0 32 ............................. CGGCCAATCACCGTTGTCATTGAAGGCGGAGC 53919 29 100.0 32 ............................. CCGAGCAGCAATGCCGCGACGGCGAGATCGTA 53980 29 100.0 32 ............................. ACCAACGCCCAGCGCCAGCGGGAGAAGCGCCA 54041 29 100.0 32 ............................. CGCAGCGTCTGGACCGTGCCCACAGCCGGTTT 54102 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 54163 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 54224 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 54285 28 79.3 0 A..........A..C..-.....A....T | C [54289] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTAGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63873-64938 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRET01000009.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_9_length_249443_cov_67.2778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63873 29 96.6 32 ...........G................. GCTTCCATATTTAGCGCCTGGATATCCGCTAC 63934 29 96.6 32 ...........G................. GTGCCGCCGGTGCTCGAAGCGGTGTCTGTGGT 63995 29 96.6 32 ...........G................. ACAACGCAGATCGGCGGCCACATCTTTTTCAA 64056 29 100.0 32 ............................. AACGTGGACGGCCTGCGCGCTCGCTACGCCAT 64117 29 100.0 32 ............................. CACCTCGGCCATGTGCATGTCGCCAATGACCC 64178 29 100.0 32 ............................. TCCTTGACCTCGCCATGGACCCAGCCGTTGGC 64239 29 100.0 32 ............................. GACCGAGTCGCCCCAGCCGAACTGGTTACCGG 64300 29 100.0 32 ............................. AGCGCTTGTGCCGAGCGCTGGGAAATGAGCCC 64361 29 100.0 32 ............................. CAAAGAGTCTAGTTAGTAACGCCGAGGCCCTG 64422 29 100.0 32 ............................. GATGGCAACCGGCGTTTGTCCGCGCTGAACTG 64483 29 96.6 32 ............................A GCCGCTGAGCAGCACCTACCGGCACCTGAAGA 64544 29 100.0 32 ............................. TCACGATCACTGCTGAGAACCCCAACCACACC 64605 29 100.0 32 ............................. CATCTGGCCGGGGCTCGGGTCTGGTTCTACGA 64666 29 100.0 32 ............................. TAGTAGGAGGGGCTAAACCCAACTGGTCAGGT 64727 29 100.0 32 ............................. CATCCTCAGCCAATCCCCACCGGCTGCCCGCA 64788 29 100.0 32 ............................. AGGCCCGCATCCGCGAGCTGATCGCCGCCGGC 64849 29 100.0 32 ............................. CTAGCCATGGCTGAGGACGCAGCAGCAAAGGG 64910 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.2 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCCACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61-1048 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRET01000020.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_20_length_115232_cov_67.383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61 28 100.0 32 ............................ TGAACGCGATTCGGGAAATCGACATTGAACAC 121 28 100.0 32 ............................ TCGAAGGCATCGAGCCCCATCAAGCGCCAATC 181 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 241 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 301 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 361 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 421 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 481 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 541 28 100.0 32 ............................ TTGATGGGTTTGTACTCAGGCCCGGAAAACTC 601 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 661 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 721 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 781 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 841 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 901 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 961 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 1021 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61-868 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRET01000071.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_72_length_1010_cov_81.0136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61 28 100.0 32 ............................ GAACACAGGGGCGCCCCATCCGGCGCAATCGA 121 28 100.0 32 ............................ ATAATGCTCAACCCGTTAGTACCAAGGTCTTC 181 28 100.0 32 ............................ ACTGCACCCAAGAAAATAAAGCTGTCTCCAGA 241 28 100.0 32 ............................ ACGGTCTGCCCGAGTCGATGATGAAGGGAATT 301 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACGAA 361 28 100.0 32 ............................ AGATAGCGGGCGCTTCGTCATTGGCTCCGTTG 421 28 100.0 32 ............................ ATCACCCTGTCGATCAGGTCGATCATCCCATC 481 28 100.0 32 ............................ GCGCAGGCCCGATGCCTCGAAGCGCTGCACCG 541 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 601 28 100.0 32 ............................ TTGAAGGTCGCCTTGATGCCTTCTTTGATCGC 661 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 721 28 100.0 32 ............................ AGCTAGAGAGCTAAATCCTGCGTGGAACAGGA 781 28 100.0 32 ............................ ACGTCGAGGGGAAGTGGGATACGCCTACGATC 841 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : TGGGCGATCGAGCACGGCATCACGCGCGAGACGTTCTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACTGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRET01000032.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_32_length_46282_cov_63.6901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94 28 96.4 32 A........................... ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 154 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 214 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 274 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 335 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 395 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCGGAGAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTCTCGCCTAAATTGGTGTCCGGGATCAGTAGACCACTACA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9936-8947 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRET01000032.1 Pseudomonas aeruginosa strain SJU-W20_2 NODE_32_length_46282_cov_63.6901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9935 28 100.0 32 ............................ ACATCCGATTCACCGGATACAGCTGGTTTTCA 9875 28 100.0 32 ............................ TGAGTTCTGAGACGATCGGCCTCGGCGATCCC 9815 28 100.0 33 ............................ ATGTCGTGGTGCTCCTTGGAGCAGGGGCGCCAA 9754 28 100.0 32 ............................ TCGATCAGACGACCGTAGGTGCGCAGGCCTTC 9694 28 100.0 32 ............................ ACTACCGACAACGCCAGGGCGTAAAGCTGCGG 9634 28 100.0 32 ............................ AACTGGTGTTCTTCGGGAACCAAGTCGGCAAC 9574 28 100.0 32 ............................ AATGCCGAACCGCTGCAGCCAGGTATCGGGCC 9514 28 100.0 32 ............................ AGGGGCATTTCCTGATCATCCGAGGAGATCGC 9454 28 100.0 32 ............................ ACGACGGCCGCCTTGCGGATCTCGGCAGCGGA 9394 28 100.0 32 ............................ TCCTGGTCGTCCTGCGCTCGTACGGCCATGGC 9334 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 9274 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 9214 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 9154 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 9094 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 9034 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 8974 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //