Array 1 1044896-1045749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017305.1 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 1044896 35 100.0 40 ................................... TAATCATGTTTTGGAGCCTTGCTCCAGTAATCTACATCAA 1044971 35 100.0 38 ................................... CGGGAACGCATCTCCTACAATTTCAGCTATCCCCGCAT 1045044 35 100.0 37 ................................... TTCAGAGATAATAAATATCTTTTTAAACATTATACTT 1045116 35 100.0 47 ................................... TTGTAGATTAGCCACCATTCTTGATAGATCAGACGTCCGTTTTTTTC 1045198 35 100.0 36 ................................... TCAAGTATCTCCTCGTATGTACCCACAATATCACTT 1045269 35 100.0 42 ................................... GAAATTCTCTTGCATCTTTTACTGTAAAGTTTCTATTAGCAG 1045346 35 100.0 39 ................................... GGCTTGCGTTCCCACGTTTTCAGCGACCATGGCATATGA 1045420 35 100.0 40 ................................... CAAGCGCATTCCGCGTCTGTCCATGGGCCATACGTGAATC 1045495 35 100.0 39 ................................... GGTCGTATGACGAAAAGTCTTCCGAAGTCCGGTAAGATT 1045569 35 100.0 39 ................................... TTTTTCCTGACTGTCACGCTTCGTGCAATACAGCGCGGC 1045643 35 100.0 37 ................................... TTTTTTCCCGATCCTCGGTACGATCCGCGACCAGCTC 1045715 35 85.7 0 ..............................TTCGT | ========== ====== ====== ====== =================================== =============================================== ================== 12 35 98.8 40 CTTTATAGCTTATTGCACTCGCAGAGGATTGAAAC # Left flank : TTCTGCGGAGGAACCATCTTGCGAACGTTCAGCGCGCCCTTTTCGCCGTTAGCAGCTTTGCCCGATTCCTGACGCTCTTGAGTTTCCGCTCCGGCCACGCTTGTTTGTACTAAATGGTGATGAAAAGAGTTACGGCGTCAAAAATAACACCATAAAACGAAACAACAGCACACTTGCCGGTAAAAAATCAGCGCGACGTGATAGCCGGAACCTGCACGGAGTACCGTCCGTACCGCCTGCCGGTATGAATGTCGAGACCTCAGGAAATGCAAAGAGGAAATATGCGGGTTTTCAGCGGTAACGTTATGGCAATAAAGCAGTTATGGCGTTCTGACGTGGAGCCTGAGCCTTCGATGTTGTTTATCTCGTTTCTTTTCAGTAAGATAGGGGTGATGTTCAGTAGTACAATCAGACCATTGTCCCTTGGCATCGCTGATTTTTCCTCGAGCCTTTGATTTCGCTCCCGCAGCTCTTGCCAGTCAAGCGTTTCCGGGGGTACT # Right flank : TTTTTGGCTTGGTTATGGAAAAATTGGCGGATTGTGTTATTTAACTTCATATCTTTCAGCCCTTCATGCAATTCATTCTTGTGACCTATGACATCGAGAACGACCGGCGGCGGACGAAAATCCACAAGGTGCTCGAAGGGTATGGGGTTGCCGTGCAGTACAGTGTGTTCGAATGTTTCCTTTCCGATCAGGATTATGCCACGCTTCGTCACCGGCTGCGGAAACTGATGGATTCAAAACATCCGCTCGACAGCATTCGCTACTATCGCCTTTGCCGATCATGCGTTGAAAAGGTCGATACCGACGGGAACCGCCCGTTCGCGGTTGCCAGTCCGTTCATTATTGCCTGAAAACGTTGCATCCCTTTTCACCATGTTCATTTATTGCTCCGGCCATTACAACTCATAAACAATTGCCCCGGACTTTAGTCCGGGGTATGTGGATAAAACAAAATAAATCAGGGCTTTAGCCCAATATCTTTCAAGGGCGGCAATTGCAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAGCTTATTGCACTCGCAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 1048730-1049136 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017305.1 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1048730 35 100.0 42 ................................... CTACCACAACTGACATGTTTTTAAAAATAGAGGGTTTAAAAA 1048807 35 100.0 40 ................................... TGAAAATAATTGTCCATGCCCCTTTTGGGATACGACGTGT 1048882 35 100.0 36 ................................... GAACGAAAATACATTATTTACTTTATACAAAGAACT 1048953 35 100.0 37 ................................... TCATGAGATGAGCCAGAAAAGGACGTTCTAACAAATG 1049025 35 100.0 42 ................................... ACACGAATGTCCGTTGTTGCTTCTCAAAACATCAAAATACCT 1049102 35 88.6 0 ................G...............GTA | ========== ====== ====== ====== =================================== ========================================== ================== 6 35 98.1 40 CTTTATAGCTTATTGCACTCGCAGAGGATTGAAAC # Left flank : GCTCAACCGGGGTTTGCTGAAGGAAAACGACTTTTACTGCCGCAAGGATCAGCCCGGTTGTTTTCTCTCGAATGACGCCCGAAAACGGTACATCAAGATTTTCGAGGAGCGGATGTGGCAGGAATCGCGCGATGGCAGCACCGGCAAAACGCTGAACTTCCGGCGGCAGATGGAAAAACAGGTCAGGATGATGCGCGACGTGATCGCCGGAACTCGTACGCAGTACGATCCGTACCGGTTGAAATGGTAAAACCGCAGCTCAAATTTTCGGATGGTTAAAAATGCCAGAAAAGGGCATTAACTGCTTGTGGAATAACGGGTAATGGGAGATAATCGTAATCCGTGAGCTGCGGTGCTTGCATAACTCATTGAAATTGCATAACCTACAGAGGTAGTTCAGTAGTACAATCAGACCATTGTCCCTTGGCATCGCTGATTTTTCCATGAGCTGCGGTTTTGGCTCCCGCAGCCCTTGCCAGTAAAGCGTTTCCGGGGGTACT # Right flank : AATAAACATCTATTGAAATGGCTATCAACCCTATCCAAAAGAAAATAAAGGCACAGCAAGCCATTAAGAAGTTTGCAGAGACTGTTGTGGGGAATAAAAATATAGGCTGGTTATCAGTTTTGTGCCTTTGCTTGTTTTTTATTGCGTCAGGCTGGTTTTCGGACGGATTGGCTGAATATATTGACTACCTGCTTGGTGGTCTCGGGCCTGCCGTGATCAATTATAAATTATTAATATCAATATTTATTATTTTATTGTTTTGGTTTTTTGTGGTTAATGTTGTGCATGGCGATAAGGATAAAATAATAGTCAATAATGACCAGTCTTTGCCGACTAAAGAGTTGGTTTTGTTTTTAAGTAATTTCAGGAATATAGCCAGCAAAGAGTCTTCGATAAATGCTGGTGAGTTGGTTAGTAAAGAGTATCTCGAGCAAAAATATGCAGAAAACGCATTTCATTTTGATTTGCTTCTTGACACAACCTGGGAAATGCCGTTTCGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAGCTTATTGCACTCGCAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 2359906-2362375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017305.1 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2359906 28 100.0 33 ............................ CCGCTCGCGGCTGATGGTGAGTTTTTGCTGTGC 2359967 28 100.0 33 ............................ CGTCAGGATCGAGCACGTTGGTACTGGCATAAG 2360028 28 100.0 33 ............................ CTACATCGCGCACGGAAAAAACATCACCTGGGA 2360089 28 100.0 33 ............................ TTTTCAAGTGTGTACAAATTTAGGGCTACATAC 2360150 28 100.0 34 ............................ TACATATTCATGTAACTACATAACAGCACAACTG 2360212 28 100.0 33 ............................ TCGAAGAGGTTCCTTTACATTGGAGAATTCCAC 2360273 28 100.0 33 ............................ CCTTTTTCATTGACTACTTGCAAGTTTATCGAG 2360334 28 100.0 33 ............................ TAGCTGAAAAATCGGTCAAAAACGCTTTCGAGG 2360395 28 100.0 33 ............................ TATCGCGTTCCGTAATACGGGATTACAGGGATG 2360456 28 100.0 33 ............................ CACATTAAAGCGATCATACGCCGCGCGACTTGT 2360517 28 100.0 33 ............................ CCCGTCCATGTGCCTGGATATCTTGCATATCCC 2360578 28 100.0 33 ............................ CCGGTCAAACGGCGGCTGCTTCGGCATACTGAT 2360639 28 100.0 33 ............................ TTTCCGGCATCTCGTCCGCGACGAGCGCCAGCT 2360700 28 100.0 33 ............................ CCCGGCCTTGCTCCACTTCGTGAAGTCCGTCGC 2360761 28 100.0 33 ............................ TATTTATCTATATTTTCGTACCATTGCCGTTCT 2360822 28 100.0 33 ............................ TGGCTTAACGGAATTATTAAAGACGTTTGCCAG 2360883 28 100.0 33 ............................ CGGCGTCCAAGAAGGAAACGACGAAAGCGTACT 2360944 28 100.0 33 ............................ CTTACACGATCACATATAAGCATTATAAAAAAA 2361005 28 100.0 33 ............................ CTTCAGAAGCGAATTACCCGATCAGGAAAGTTT 2361066 28 100.0 33 ............................ CCCCGCGCTGGGCGGGGCTGGTGGGCTGATTGC 2361127 28 100.0 33 ............................ TTCTTCAGAGCCAGAAGATTTCTGCTTCTACGA 2361188 28 100.0 33 ............................ TATTTCGACAAATTGCTTGCTATTGATGATGAA 2361249 28 100.0 33 ............................ TTTTGTGCTGCGCGCGGCGTTCCTGACAACCCC 2361310 28 100.0 33 ............................ TCGGTCAGGTGCTGATCGACCATATCCGTGACG 2361371 28 100.0 34 ............................ CTGGCGAGCGCATCGTGTTGCCGATTTCGGACGA 2361433 28 100.0 33 ............................ CTCAGCAAGCTCGCGCGTCGCTTCATCATGGTC 2361494 28 96.4 33 ....G....................... TGGCTTTTACGATTTGTCGAACGGTTTGGGCAC 2361555 28 100.0 33 ............................ CTCCACCGATGACAAAAGAAGTTCCTCAAGTCA 2361616 28 100.0 33 ............................ CAGAATGCACCCCTCGACGATCCGTAATCGTCA 2361677 28 100.0 33 ............................ CTTTGCTTTTTTACGGTTTTCCTCCCACTGGTG 2361738 28 100.0 33 ............................ TCCGTCAAAGAACGGCGACATCTATGTGATCTC 2361799 28 100.0 33 ............................ CTTTGACTGTGGACTCATAGGAAGCGTACCGGT 2361860 28 100.0 33 ............................ CGAGATGGGTACGTCGCCCTATACGGTCGATGA 2361921 28 100.0 33 ............................ CATCAAAGGAGAGTCATCATGACAAGCGAAGCA 2361982 28 100.0 33 ............................ TTTAAGCTCCTTTTTCTTATGCTGTTCCAGACT 2362043 28 100.0 33 ............................ CTCGCCCACATGACCGTAACCGCCAGAACCATC 2362104 28 100.0 33 ............................ CGGAGATGGCATCATGACAAACGCAGAAAAACT 2362165 28 100.0 33 ............................ CGGGAGTTCCGACATACGTCGCTGCCGCCGACA 2362226 28 89.3 33 .........................GCG TTTTATTTCAGTCACCAGCACCGGCTCCGTCTC 2362287 28 89.3 33 .........................GCG CTCAGGCCAATAATAACTGAAACGGGTATCGCG 2362348 28 89.3 0 .........................GCG | ========== ====== ====== ====== ============================ ================================== ================== 41 28 99.1 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GCAGGTCTCCATCGATCTGGCTTTTGCCATGACTGCCGAGATGGCCGGATATTACGACCGGCACAAGATCGCCGCGGAGTTCCGGAAGCGCGTCATCGAAATCGACCTGCTGGGCAAAATCGGCCCTGACATCGAAACCATTCTGGGGAAAAAGCAATGCTTGTCGTAGTCGCCAATGACCTGCCCCCGGCGGTGAGAGGCCGGATGAAGCTCTGGTTCATCGAACCCAGGGCGAACGTTTTTGTGTCGGGCGTGCGGGACAGCCTGGCCAGAAAGGTGGTGGACTATCTGCACGAGCACTGCCCGCCGAAAAGCGGCCTGATGATTTTCAACAGCTCGAACACGTGCCCCGGCTACGAGATTTTCGGCTTGGGCGACACGCGCAAAGAGATCACGGAAATCTCGGGCCTGCCGCTCGTGATCGAAAAATCCGCCGAACCGCCACCAGATAACCCAAACAGCTTGACGCCAGACGTCCCGAAACCCCAGTAAAACCCAGT # Right flank : GTCGCAAAAAGTGGACGGGATGGACAGTGTGGACGATGTGGACGATGTGGACGGACGGACGGGCGATGCGACTGGAAATGGGGAAAGTTGCTCCCGCTCGGGCAATGTCGCTCGGCTTGCGTGAAAGAAAAAGGGCGAACACGCAGATTCGCCCCTACAAAAACTGGATGCCCTATCGCGCAATCACAACCTTGTGCCGATGCCGAGGAGGTCGGCGATGTTGGCTTTGGGGTCGATGACCGGGCGGATGACGGGGGTGGCGCTGGTCATGATGGTGGTGACGCCGGGGCCGTGGCCCGCTTCGCGGCAGTCGCTGTGCACCACCACACCGATGGTGACGGCCCCCTTGCGGTAGGCTCGCCCGTAGCGGTTGTCCTGATCGAGCAGCGCCACGAAGTCGCCGAAGCGGATGCGGTCGAGGCCGAACTCGCGCACGGCGTCGGGGTCGCTGGTCACGATGTCGTAATCGCCTTTGGCCACGTGCGCCGAGCCGATGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //