Array 1 1400552-1398554 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029458.1 Clostridium novyi strain 150557 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1400551 30 93.3 37 ...C.............A............ TTAAACTAGGTTCAATTGATTTTAAATCTGGAACCGG CCA,C [1400541,1400545] 1400480 30 100.0 36 .............................. AGAAATATGAACAGAGGTGAAATTTGTGAAAGTGAA 1400414 30 100.0 37 .............................. CAACAGCATCATGAGAACCTTGCTCATATTCAAAGTG 1400347 30 100.0 34 .............................. TTGTAATAGATGAAGATAAAATTGTTTTTAACAC 1400283 30 100.0 35 .............................. ATAAATTCTACATTTAAAAACGCATTAGAGGAAAT 1400218 30 100.0 34 .............................. TGTATAACCTCATTTAATCACTCCTTCTATTAAA 1400154 30 100.0 35 .............................. GTAAAGTGTAACATGTAATTTACTTAATAAAAGTT 1400089 30 100.0 34 .............................. GCAAGATGCCAGCAAACTACAACAACAGCAGGAA 1400025 30 100.0 34 .............................. TTGTTTACGAATTTAATTTGTCTAATAGTTAATT 1399961 30 100.0 38 .............................. ATAATTCCAATAAATAATGCTATAAGACTGTCATTTTG 1399893 30 100.0 36 .............................. CAGTTAGTAGAATTATTTCTCTAGCATTACTGCCGA 1399827 30 100.0 35 .............................. GGACTTAGATTTAAAAAGTTATTATCGTGTGGCTG 1399762 30 100.0 37 .............................. GATGATCTAGGGTTTATATTCAATAATTCAAAAGATT 1399695 30 100.0 35 .............................. AATTTTAACGATAGAGATGTTAATATATACTTTAG 1399630 30 100.0 35 .............................. AAAGTCTTAGCTGATTATGGGGAAACATATGAAAT 1399565 30 100.0 36 .............................. TGAAAGTGGATATTTGATGTTGGTAAAAAGTTTTAC 1399499 30 100.0 36 .............................. AAGTTACAAAATTCCATATACAAGATCTCGTATAAA 1399433 30 100.0 36 .............................. ATTTCTTCTTCACATTCAATCATTTTGTTTAAGTTT 1399367 30 100.0 35 .............................. ATTAGATATAAAGAAAATAGTGGAGGTAACCAAAA 1399302 30 100.0 33 .............................. TAAAATTAATATAAGAAAAAAGATAACAGATAC 1399239 30 100.0 36 .............................. AGAGTTAGAGAAAGAGAAAGAGATAGATAAAGATAG 1399173 30 100.0 35 .............................. TGAATATTTTCTTTAATTAAAGGAGGAATAATATA 1399108 30 100.0 36 .............................. TATTTTGTAGGAAAAGAAACTATTGTTACTCCATCT 1399042 30 100.0 36 .............................. GCCAGCAGAGCAAACAGATACCAAAATTTTTAAAAG 1398976 30 100.0 35 .............................. TTCAACCATGGAAAAAACTATAAACAAGGAAGCTC 1398911 30 96.7 33 .A............................ TTCAACTTTTAACTGGAGCTTCATAATTTTTAG T [1398906] 1398847 30 96.7 35 G............................. TTCAACCCGGATTATACGATGTATCCTGTATCAAG C,C [1398840,1398843] 1398780 30 86.7 36 TAAA.......................... TTCAACATAAATAAGTTATACAAAGTTATAACAGTG 1398714 30 83.3 36 TGAGG......................... TTCAACTTTTCTATCATACCTGTAAACTATAAATTC 1398648 30 96.7 34 ....C......................... TTCAACAAAATATTGCTTATGCTGGGGGTAAGGG C [1398646] 1398583 30 83.3 0 TGAAG......................... | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 98.0 35 ATTTAAATACATCTTATGTTAATGTTCAAC # Left flank : TATAATCCATTTATTGTACTTGCCGATGCTGCTTATGATGATGCTCAATGGTTTAAAGTTTCTAAAACTCTAGAATATAATTTATTAACAGACGTAAATATGCGTAAAGCAAAGAGTATAGAATCTTTTAAAGATGAATCTAGATATAAAAATGCTCTTTTTATGCAATCGCCAATAGGTAAAAATTTATATAAAAATAGGCTAAAAATTGAACAATTATTTTCTATACTTAAAGGACTCTATAATCTAGAAAATCCTAGACTTTACGGACAAAAACGCTATGAACGCCATATTAAGTGGGTTCTTTTATCGTATCTTATAGACGAATTTAATAAGGTTAACAGCAAAATAAGTTCTAGAAAATATCCTTGGAATCTATAGTTTTCATCGCGCTAATGCACTTACTTTTAAAAATTTTTAAAGAATTTACTAATGCACATTTAAAATTATTAAACACATGCTCGCGCATAAATGCTTTTTAACATTTGTAAAAATTAGTT # Right flank : TTCAACCATAGGAAAATAACCATTTCTTATTTTTATTATACCCCTAAAATTATTAAAAATAAATACTTTCGTTAGTTTTTTCCCAACCGTTCTTAATAATTTAATTCTCTAAACTTAAATTCCACTCAAAAACAGTAAAATCAAGGATTATGACTAGTTTAAATTTTTTAATCGGTTGGGAAAATAATTTACTTACTTTTATATAAACAATAACCATAACCAAGAGAATTTTTTTCTAAAATCCCTACTGCTAAAGCTATATTTGCCATAAATTGCGATATATCATCATCTTTAATTTCTATTTCAAATTTATTTCCTAATAATTTAATATGTTTATATTTACACCCTATAGGCATTCTATTTTTTAATTTTATACATTTTATCATATCAAGCTCTAAAGTTTCGTCTATATCCTGAATAAATTTTATCTTCTTTATTAAATTCTCATTGATACTCTTTTTTAATAAATCTATATTCATTTTATCAGTCCAAGGCTCATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1410643-1413100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029458.1 Clostridium novyi strain 150557 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1410643 30 100.0 37 .............................. CGTTATCACCACTCCTTATATTAGTTTATCCATATAT 1410710 30 100.0 35 .............................. ATATACTATGTGGAATAGAGGAGATGTTGTATTAA 1410775 30 100.0 37 .............................. GAAGCAGCACAATATTTCTATGATGGTTTCTTAGGTT 1410842 30 100.0 37 .............................. TATCTAAAAAATAGATACACTCACTATGCATATCTTT 1410909 30 100.0 34 .............................. CTAGTTTGTATTACTTTAAGTCTGTTTATAGCAC 1410973 30 100.0 36 .............................. AATTTATAATTATCATTTAGAACTGTTGTAATAATA 1411039 30 100.0 36 .............................. GAAGAAATAAGTTTAGATGATAAAAAGCTTTTAGAA 1411105 30 100.0 36 .............................. CTTTTAGTTTCTACATTGTCAATACTACTTTCCCAA 1411171 30 100.0 35 .............................. AGTTTTTTTGCTTTGTTTTCTATAATTTTATCCTG 1411236 30 100.0 35 .............................. TAATAATACTGTGTAATTATATCTACTCCAGATTT 1411301 30 100.0 35 .............................. TTTATTTCATTTGATATACATAAATTATTTATAGC 1411366 30 100.0 36 .............................. ATTTGTAGGTAAAAATAAAAGAACTTCTCTAGTAAC 1411432 30 100.0 35 .............................. AGTGATAATAAATGGCTTATATTTGTAAGCAATAA 1411497 30 100.0 37 .............................. TAACCAGCAACAGTTGGTCTACTCTTATTAAGCAGGT 1411564 30 100.0 35 .............................. TAAAGATACGAGGTTAAGAAAATATAAAGAAGCAT 1411629 30 100.0 35 .............................. TACCAAACTTTATTTTTCTTTTTATCTGCTTTTAA 1411694 30 100.0 35 .............................. ACGTATTGTTTTTGTTGTAAATCTCTCGCATCTGT 1411759 30 100.0 33 .............................. TATTTAACTAACAACCTAACACATAAAAGTTAA 1411822 30 100.0 36 .............................. CGTTTACGGCAAATAGAATCTATATATTCTAAAGAA 1411888 30 100.0 35 .............................. GAAAAATATAGCTAATAGAATAGGTACTGTAAACA 1411953 30 100.0 36 .............................. GTATTTTCTTTTATAGAATTAAGTAAATTACCAGCA 1412019 30 100.0 36 .............................. AAATTTAAAATATAAGAAGGTAATCCCATTAGTTAT 1412085 30 100.0 37 .............................. TATTTAAATGTACCACTAGAATTCACATCCCCTACAT 1412152 30 100.0 36 .............................. CTAGCATTAGAGTTGTTTATTTTTATATCAAATATA 1412218 30 100.0 34 .............................. TCTTATTCTCTAATAAATTAACTTTAGATTCTAT 1412282 30 100.0 35 .............................. GCAGGTAATGTGTGTGGCAGTATATCTCCCTCTGC 1412347 30 100.0 37 .............................. AGCAAAAACATGAGTATAAATAATGTATTTGATAGAA 1412414 30 100.0 37 .............................. TATATTACTAATTCTTCTTCTATAGTAAAGCTATATT 1412481 30 100.0 37 .............................. TATATTTTAAATTCATCACAATTACAGTTATAACATT 1412548 30 100.0 35 .............................. ATATCTTACAGGTCCTAAAACCCTTCCAGTTTTTA 1412613 30 100.0 36 .............................. TTATAACTTCCTTCTGTAACTAATTTATATTTTAAT 1412679 30 100.0 36 .............................. TTTAATGCACCATTGGAACTGTTAACTGCTTTTTTA 1412745 30 100.0 36 .............................. TATATAAAGCCTACCCTTCGTGGTGGGAAAAAAGTT 1412811 30 100.0 35 .............................. TTATATGTTAATTCCATTTATACCTCCTAGAATTT 1412876 30 100.0 34 .............................. AGGGTAATGGCTGGGTAGGTATAGGCTATCATTT 1412940 30 100.0 35 .............................. TCTATTCTGGAAGGTATTTGTTCTCTATCTTCCTT 1413005 30 100.0 35 .............................. TCTTGTTCACACATTATTTTTAGTAACCCTTTATC 1413070 30 93.3 0 ............................GA | C [1413094] ========== ====== ====== ====== ============================== ===================================== ================== 38 30 99.8 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTATTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTTAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATGAAAGTTGGTTGGGAAAAAACTAACGAAAGTATTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : AAAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGAGGTATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCAGCTAAAAGTATTACATTAGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTTTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTGTTAGTTATTATAGTTAAATTTTTTCTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1563634-1564396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029458.1 Clostridium novyi strain 150557 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1563634 29 100.0 36 ............................. ATGTAATAAATATAAATAATAAATATAAATAACTAT 1563699 29 100.0 37 ............................. AATTAGATGGTGTTTTAATCTCCATTTATTCGGTTCT 1563765 29 100.0 38 ............................. GAATGAAATATATAATAAAATAGTAAAATAAAATATAA 1563832 29 100.0 38 ............................. ATGTCCATTACTTCTATAACTGTTGAGGTTGGCTATCT 1563899 29 100.0 37 ............................. TTTAGTACTTGCTGTCCAGCTACAAATCCAGTAGCAT 1563965 29 100.0 38 ............................. AATGTTTCAGCTTGTACTTTTTTAGCGTTTAAAATTAA 1564032 29 100.0 38 ............................. ATCCCAATCTAATTTAGAATCTTGGGACTGGTCTACGT 1564099 29 100.0 37 ............................. TGGGAACACGTTTCATTTACATTTAGTATAGAAGGAG 1564165 29 100.0 41 ............................. TAGTTAGCCCATTCACCTCTTGCTTTCTTTGCAGCAATACC 1564235 29 100.0 39 ............................. CTTTCGGTTCTTGTATTTTAATTATGTTATCTTTTTTCT 1564303 29 100.0 36 ............................. CAGATACAGACTTAGAAAAAGCTCCAACAGAAGAAG 1564368 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ========================================= ================== 12 29 99.7 38 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : TGAGCATAGCAATAAATTTCGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTGCAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAACTCTCCATCATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //