Array 1 40-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJATM010000006.1 Providencia rettgeri strain 2021EL-01180 NODE_6_length_156503_cov_69.750863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 100 28 100.0 32 ............................ CTAGGAACCCGATCACCCTCATGCATAGCTAA 160 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 220 28 100.0 32 ............................ ACTGCTCGCAATCCGTTTTCATGCTCCTGCGG 280 28 100.0 32 ............................ TCACTATTAATAGCGATATGAATGATTAAGTG 340 28 100.0 32 ............................ CTAACACCCCTCATTTAAAGCTGGTATATCAG 400 28 100.0 32 ............................ AGTGGATTAAAGAGCTTAATTTATCAACTTAA 460 28 89.3 0 ...T......A.........T....... | G [486] ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGAAACTAGGAACCCGATCACCCTCATGCATAGCTAAG # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGACCGGGTAATCAGATAATAATAGAGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 193358-194585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJATM010000002.1 Providencia rettgeri strain 2021EL-01180 NODE_2_length_203949_cov_58.611411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 193358 28 100.0 32 ............................ ACAGGAAATGATTTAAATGTGATCTCTCCATT 193418 28 100.0 32 ............................ TAGCGCACCACGTAATGCACCGCCTATTGTAA 193478 28 100.0 32 ............................ AACTCAACTCCATCATTTCCACTCGGCATCGT 193538 28 100.0 32 ............................ AAGTGAAATGTCTTCATCATCGAATGTATAAT 193598 28 100.0 32 ............................ ACATCGGAATCGTGGCGTGATAAACAATCAGG 193658 28 100.0 32 ............................ CCTACCCGATGGATCGTACGGTTTTATCTCAA 193718 28 100.0 32 ............................ AGTCAATGAACCTATCATTGAACCTAATAAAT 193778 28 100.0 32 ............................ CGACTATTGCGCCTTGTAGGTAACTGTTCTCA 193838 28 100.0 32 ............................ GATCACCGGTGAAAATCACAATCAACATAATA 193898 28 100.0 32 ............................ TCGCACAATTGCTGCAAATGGTTGCCGTAAGC 193958 28 100.0 32 ............................ TTTATGGATGCACTCATTACCGGTCGAAACCA 194018 28 100.0 32 ............................ TAATGGTATGCCAAGCGCTACCAACGAAATAA 194078 28 100.0 32 ............................ AATTACATGGCACCCTTGGTCTACACTCAGAT 194138 28 100.0 32 ............................ TGACAAATCTAAAATTTTCAATGTCAACAATA 194198 28 100.0 32 ............................ TATCAAAGTGGGTAAAGGCGAAGAGTATGAAA 194258 28 100.0 32 ............................ ATCATCGAAAACGAACTCTGAACCTTTTAAGT 194318 28 100.0 32 ............................ ATCTATCACTATTGGTGATTCACTGATTGCAT 194378 28 100.0 32 ............................ AGTCATCCTCTTTATCTATCGTGTAGATGATG 194438 28 100.0 32 ............................ TCATGCTGATGAATGGGATCAGGATGTTCTCT 194498 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 194558 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.2 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAGCCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTAACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAATGCCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAACTAGTACATTGTTTTTCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGGAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATCTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 203223-203910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJATM010000002.1 Providencia rettgeri strain 2021EL-01180 NODE_2_length_203949_cov_58.611411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 203223 28 100.0 32 ............................ ATTATACCGCAAGCTGAAGTGGGTATTTATGT 203283 28 100.0 32 ............................ GCAACCGAATACTTCGACGCAAAACCAGACTA 203343 28 100.0 32 ............................ GCGATGGTGACTGCACTTGATGTCCGTCATAA 203403 28 100.0 32 ............................ ACATGAAAATCGCCAGTGAATGCCTCTTGGTT 203463 28 100.0 32 ............................ CCCATTGAATGCGAACGCCTACAGGGCTTTCC 203523 28 100.0 32 ............................ ATTTTTTGCCGTTCCACTTATCAAATTCTGTT 203583 28 100.0 32 ............................ GAAGATTTAATTTCCCTTGGCAATATCAACCA 203643 28 100.0 32 ............................ ATTGAAGTTAATACTGGTGTAGCCGCTGTTGT 203703 28 100.0 32 ............................ TTGAAATTTCAATTCTAGCAGATGATATTTCT 203763 28 100.0 32 ............................ AACTTGCGATCTATTGCCTTAATTTCCTCGTC 203823 28 100.0 32 ............................ CTAGGAACCCGATCACCCTCATGCATAGCTAA 203883 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAATCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAAGTTTTAAATCAGCATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : TCAGAAATAGCAAAGAATCTCACGATTTCCGAGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //