Array 1 202710-204384 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKT01000016.1 Escherichia coli strain 711 BN4_711_1_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202710 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 202771 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 202832 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 202893 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 202954 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 203015 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 203076 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 203137 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 203198 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 203259 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 203320 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 203381 29 96.6 32 .................A........... GCACCACGCGTACCCCGATGTTTGTTTTGCCA 203442 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 203503 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 203564 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 203625 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 203686 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 203747 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 203808 28 96.6 32 ............-................ CGTTCTGAATCCGATATTCTTCAGCACCTTCA 203868 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 203929 29 96.6 32 ....................A........ ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 203990 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 204051 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 204112 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 204173 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 204234 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 204295 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 204356 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 219901-220173 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKT01000016.1 Escherichia coli strain 711 BN4_711_1_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219901 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 219962 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 220023 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 220084 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 220145 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //