Array 1 361492-363045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBC010000003.1 Salmonella enterica strain 105 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361492 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361553 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361614 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361675 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361736 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 361797 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361858 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 361919 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 361980 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362041 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362102 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362163 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362224 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362285 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362346 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362407 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362468 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362530 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362591 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362652 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362713 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362774 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 362835 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362896 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 362957 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363018 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379178-380654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBC010000003.1 Salmonella enterica strain 105 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379178 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379239 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379301 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379362 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379423 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379484 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379545 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379606 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379667 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379728 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 379789 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 379850 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 379911 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 379973 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380076 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380137 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380198 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380259 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380320 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380381 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380442 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380503 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380564 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380625 29 96.6 0 A............................ | A [380651] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //