Array 1 453692-455184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYU010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S79 NODE_1_length_633770_cov_416.417743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 453692 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453753 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 453814 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 453875 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 453936 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 453997 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454058 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454119 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454180 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454241 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454302 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454363 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454424 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454485 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454546 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454607 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 454669 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 454730 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 454791 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 454852 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 454913 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 454974 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455035 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455096 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455157 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471316-473219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYU010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S79 NODE_1_length_633770_cov_416.417743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 471316 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471377 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471438 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471499 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471560 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471621 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 471682 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 471744 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 471805 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 471866 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 471927 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 471988 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472049 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472110 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472171 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472232 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472293 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472354 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472415 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472476 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472538 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 472599 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [472641] 472641 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472702 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 472763 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 472824 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 472885 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 472946 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473007 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473068 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473129 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473190 29 96.6 0 A............................ | A [473216] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //