Array 1 225346-224157 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDJ01000006.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIA .SLX_12186.D709_D507.HJ72NBBXX.s_1.r.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225345 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 225284 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 225223 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 225162 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 225101 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 225040 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 224979 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 224918 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 224857 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 224796 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 224735 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 224674 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 224613 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 224552 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 224491 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 224430 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 224369 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 224308 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 224247 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 224186 29 96.6 0 A............................ | A [224159] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236743-233786 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDJ01000006.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIA .SLX_12186.D709_D507.HJ72NBBXX.s_1.r.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236742 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 236681 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 236620 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 236559 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 236498 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 236437 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 236376 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 236315 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 236254 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 236193 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 236132 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 236071 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 236010 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 235949 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 235888 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 235827 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 235766 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 235705 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 235644 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 235583 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 235522 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 235461 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 235399 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 235338 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 235277 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 235216 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 235155 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 235094 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 235033 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 234972 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 234911 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 234850 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 234789 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 234728 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 234667 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 234606 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 234545 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 234484 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 234423 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 234362 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 234301 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 234240 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 234179 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 234118 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 234057 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 233996 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 233935 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 233874 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 233813 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //