Array 1 10079-11431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQI010000023.1 Phocaeicola vulgatus strain 1001302B_160321_H5 NODE_23_length_80118_cov_17.001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 10079 47 97.9 30 ...A........................................... CTATTATCAATCCGGCATTTATCAATGAAT 10156 47 100.0 30 ............................................... AGGTATGCCCAATAAGGGAGGTCTTTCCAG 10233 47 100.0 30 ............................................... CAGTAACTTTATTTAACCGCAACAAATTGA 10310 47 100.0 30 ............................................... GGGCTTCGCTTAATTAACAAGTGGGTGTAT 10387 47 100.0 29 ............................................... GGCTGAATTTTCAGGAGAGGAACAGCCAC 10463 47 100.0 30 ............................................... GCGCGCTTTAAATTGGTACGTTTCCCCGTA 10540 47 100.0 30 ............................................... TACCAATGGCCATTCCCCAAGGGCCTCCCA 10617 47 100.0 30 ............................................... TCGTGGTAATCATATACTTATGTGTTTATA 10694 47 100.0 29 ............................................... TAGCTGATACTTATACGAGTGAAGGGGAC 10770 47 100.0 29 ............................................... GCGCAGAAAGATCAGAATTAAGTTTAAGA 10846 47 100.0 30 ............................................... TTGCCAGTAATCCACATTATAAGCATAGGC 10923 47 100.0 30 ............................................... GAGCTTCCAACTCTTATCGTGACAGTGTCG 11000 47 100.0 30 ............................................... AAGCACGCAAACGACTATAATACGTTAAAA 11077 47 100.0 30 ............................................... ATTTCCGCCCGGACAGTATGGTTGTCGAGC 11154 47 100.0 29 ............................................... CCTGTATTAGACTTATCAATCATAGATCC 11230 47 100.0 30 ............................................... CCAAAAACCCGAATAGCTGCTTGTGATAGG 11307 47 100.0 31 ............................................... CTCGCGCTCTGTAACTTGCTACAAAGTTAAA 11385 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 18 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 93790-95660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQI010000019.1 Phocaeicola vulgatus strain 1001302B_160321_H5 NODE_19_length_96155_cov_20.6511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 93790 33 100.0 33 ................................. ACGAAACGTCCCCAATCAGTGCAATCACTTGCA 93856 33 97.0 32 ................................C TTGTCATTTACGGGGACCCGGCTCCGGGGGAG 93921 33 100.0 32 ................................. TAGAATCCCATAATGAAGATAAGCCACGAGAA 93986 33 100.0 31 ................................. TAAGTTCCTGATACTCCTTAGATTGATCTAA 94050 33 100.0 33 ................................. CAATGGGAGAAACATTTAGCTTATGCTTACAAT 94116 33 97.0 32 ................................A GTCATTAGAAAGGACACAGCGGCTAAGACCCG 94181 33 97.0 33 ................................C TAACCGATTTGAAAACTTTTACGACTACATTAA 94247 33 100.0 32 ................................. TATAACTGTAAATTGATGGCAAACATTTTGAA 94312 33 100.0 33 ................................. TTAGAGGATATTTCGTATGGTCTAAGGAAATGT 94378 33 100.0 32 ................................. ACGACAATGTCACGATAAGAGTTGGAAGTTCG 94443 33 97.0 33 ................................C GTATGACCGTGAAATTAAAGAATATGTTCCTGT 94509 33 97.0 32 ................................C TGCATTTACCTTGCTTGACATATTTGAACTGT 94574 33 100.0 33 ................................. GTTTATGAAGGAACAAATAATGGTGGTAAATGG 94640 33 97.0 33 ................................G GAAGCAGATTACAAGAAGGGAGAAAAACATACA 94706 33 100.0 32 ................................. TTAAATTAACATATAAAGGTATTGCTGACATA 94771 33 97.0 32 ................................C CCTTTGAGTGTATGCAGGCATTGTATGCCATT 94836 33 97.0 31 ................................G AACCTTTATCCTACAAACATAATCGTCCATC 94900 33 100.0 32 ................................. CAAAAAGAGGATGACAATTTGGTTAAATAGAA 94965 33 97.0 35 ................................C CATATTTTTATGCATAATCCTGACATCGTATCTAT 95033 33 97.0 33 ................................C GAAAATAGTTACGATGTCACTTACCACCGGAAC 95099 33 100.0 32 ................................. TACTAACCATAGAATTGTCATACAAAACCGTG 95164 33 97.0 32 ................................A CAGCAGAATCGTCGGAGCCGCGAAGGAAGTCC 95229 33 100.0 31 ................................. GACTTTAGAGATGGAATCTGCAATCTTGTAT 95293 33 97.0 32 ................................A CTTAAAGAATGCTTTAAACTTAAAACAGATTG 95358 33 97.0 36 ................................A TAATCTGTTTTAACATAATCAGAACCGATAATATTT 95427 33 97.0 34 ................................C GGCAAGACGGATGAGAGCACAGCAGAGATCATGC 95494 33 97.0 33 ................................C GTTGCAAAATGATTAAATGATGATGTCCTGAAC 95560 33 97.0 33 ................................A CCTTCGACTACCTGGAGGAGATACCTGCACATG 95626 33 90.9 0 ....................A.........G.A | TA [95645] ========== ====== ====== ====== ================================= ==================================== ================== 29 33 98.0 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTATTATACTATCCCTTGTCGTTTATTTGTTATATTGTTGGTTATTAATGTATTATTATCTGTTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //