Array 1 201121-204784 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEH01000005.1 Neisseria lactamica strain M37164 M37164_CHA4079A13_cleaned_ctg_2055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 201121 32 100.0 35 ................................ ATTTTTCCTCCTCCGATACAGGCTCTAACACAACA 201188 32 100.0 34 ................................ TGCCTCCCTAGGCTCAATCTGTCAATGGGTTTCG 201254 32 100.0 34 ................................ ACGGACGGATAAAGCGACAAAAGCCCAAAACGGC 201320 32 100.0 34 ................................ GATGAACAAAAAGTCTGCCGCGTGTTGTTAGACG 201386 32 100.0 34 ................................ AGATACGACGACAAGGACGGTAAAGGCACATTCA 201452 32 100.0 34 ................................ CACATAGCCCGTTTTTTCAGACGGCCTATCTCAA 201518 32 100.0 35 ................................ AAGAGGAAATAGCCAAGGCAAAGGTAAGGATAGAT 201585 32 100.0 34 ................................ GTTTAACAGGGAAAGTAACGGGGCGGCAAATGAA 201651 32 100.0 33 ................................ CTGCTTCGCTGTTTCGGTATTTTTCATGCTGTC 201716 32 100.0 35 ................................ TAGGCATGGACGGGGCAAACCCCTTACCGATACCG 201783 32 100.0 36 ................................ CCCTGTATGGTTTGCGCTATCCGCGACATGGACGAA 201851 32 100.0 34 ................................ GGGGATACTTGCAGGTGCTTGTTTAGAGAGGAGC 201917 32 100.0 33 ................................ CATGCAGACATGAAGATCAGGACAACTCAATCC 201982 32 100.0 33 ................................ CAGATATGATGCGCGATGCTGTCAATATCTCGT 202047 32 100.0 34 ................................ CTGTCATTATGGGGACACTCTATGGAATTGGTGA 202113 32 100.0 35 ................................ AACCAGATGGTACTATTGTTAGTCAAACATCAAAT 202180 32 100.0 33 ................................ TCTTGCTATGGCCTGTATCAACAGTGGCATGAG 202245 32 100.0 33 ................................ TCATCCACATACCCCTGCAAAGCGGCCTCCGCG 202310 32 100.0 34 ................................ ATAAAAGACGTTATAATCTAAAGTATGGGCAACT 202376 32 100.0 34 ................................ CGGAAAAGGAAAATCAGAATTTGACGAAAGAGAT 202442 32 100.0 34 ................................ CTGAAAGCCAAGATATGTGCGGATATGCTAGCCA 202508 32 100.0 34 ................................ CGTCTTTGCCGTCCCTGCCGTTTGTGCGCCCCGG 202574 32 100.0 34 ................................ TTGTTATAAATGTGTAACGTCGTTGGATAACCCG 202640 32 100.0 33 ................................ AATAACCGGCGTTGTGCCGTTTCGGCGGGCGGC 202705 32 100.0 33 ................................ AGAAACGGGCGCGGCGGCAATCGGCTTTTTGCG 202770 32 100.0 34 ................................ AACTTGGCGCGTCCAAACTCACCGGCGAATTTAA 202836 32 100.0 34 ................................ AACGGCACAAGGAAGCGGCAAAGGCAAAGGGGAC 202902 32 100.0 34 ................................ TCCATATGTCTAACGTGTCAACCTGATCTGTTGA 202968 32 100.0 34 ................................ CGCCTCATCCTCCGACGGAATACCCGAAACATCC 203034 32 100.0 34 ................................ CCGTCTTTGCCGTCCCTGCCGTTTGTGCGTCCCG 203100 32 100.0 34 ................................ AGCTGTTGACCGTCGTACGTGCTTTAGCGCGGAA 203166 32 100.0 34 ................................ AAAACAATCATTGAAAGGCAGAACCATGAACAAG 203232 32 100.0 33 ................................ TTTCAATATAAAGCTGATATTGCCTCTCTGTTT 203297 32 100.0 33 ................................ CTTGCTGAAAGTTTCCGGATGCCCATTATTTTC 203362 32 100.0 34 ................................ AGTAACCTTTGCCAAGGCAGGGGGAGGATGTCCG 203428 32 100.0 35 ................................ TGTTGAATCTAACGCAAATGTAGTAAAAATATCTG 203495 32 100.0 34 ................................ ACGACTCCCCATCAGCCAAACCCCGCGCCCTTTG 203561 32 100.0 34 ................................ CCGCCTTTAAGAACGACACGAACTGGAGAACCTG 203627 32 100.0 35 ................................ GAAAAAACCACACCGACCCCCACGGCGCAGCAGGA 203694 32 100.0 34 ................................ TTTGAGTTTGGTTTGTGCTTCGCTTGGCTTTTGC 203760 32 100.0 34 ................................ ACGACTCCCCATCAGCCAAACCCCGCGCCCTTTG 203826 32 100.0 34 ................................ CCGCCTTTAAGAACGACACGAACTGGAGAACCTG 203892 32 100.0 35 ................................ GAAAAAACCACACCGACCCCCACGGCGCAGCAGGA 203959 32 100.0 34 ................................ TTTGAGTTTGGTTTGTGCTTCGCTTGGCTTTTGC 204025 32 100.0 34 ................................ CCAACTACATCTGAAATTGCGTTAGTTACCTTTC 204091 32 100.0 34 ................................ CTGGTGTTCCTATTTTAAACAATTCCTTTGTTTC 204157 32 100.0 34 ................................ TGAAACTCTACGTTTACGGTTTCAGACGGAAGAT 204223 32 100.0 34 ................................ TGTCTGAATATCTCTTTGTTCGTCTTTATAAGGA 204289 32 100.0 33 ................................ TGAAGATGGGCGGAGAGATTCCGAAAAATCTTA 204354 32 100.0 34 ................................ CAGATTATACTGGTTCAATGCTCGCACAAGCTGA 204420 32 100.0 35 ................................ TTCGCGAATTGAGCGAGCAGAATGGGCAGCCTATG 204487 32 100.0 35 ................................ GGCGAAATCACCAAGCAAGAGATTGTTAGTGTCAA 204554 32 100.0 35 ................................ CTATATAACATAGCTGATACCCAAGACGATTACCG 204621 32 100.0 34 ................................ ACAACCATTTTTATTGCTCCTTGCTTTTGTGTTT 204687 32 96.9 34 ...............T................ CTACAAAACGGCAATCACGCGCCGCTACATCCAA 204753 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ ==================================== ================== 56 32 99.8 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGAGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATAGGGAATATCTTTGTTAAAAACGGGTTGATATTATCTACACATATTAATATAATGATAATCATTATTAATCAAATAGGGGAAAAGTAGAGATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCTTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCTTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATACTGCTTCCTATAAACAAGACGGTACGGAAATTCCCGACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 162360-163516 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEH01000006.1 Neisseria lactamica strain M37164 M37164_CHA4079A13_cleaned_ctg_2053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 162360 36 100.0 30 .................................... TGTCTGTTGCTTTGCTGTAAACTTGAAACA 162426 36 97.2 30 .....G.............................. TTCGGGATTAAACAGCCTTTTGGTCAAAGC 162492 36 100.0 30 .................................... TTACCCCTTTGCCAAGAGATAGTGAATTGC 162558 36 100.0 30 .................................... TCTCTTCCAGCTTTTTGGCATCCATTTCTT 162624 36 100.0 30 .................................... TTACCCCTTTGCCAAGAGATAGTGAATTGC 162690 36 100.0 30 .................................... TCTCTTCCAGCTTTTTGGCATCCATTTCTT 162756 36 100.0 30 .................................... TTACCCCTTTGCCAAGAGATAGTGAATTGC 162822 36 100.0 30 .................................... TCTCTTCCAGCTTTTTGGCATCCATTTCTT 162888 36 100.0 30 .................................... AGGTATTTTGGATGAAATGACTGCTGAAAT 162954 36 100.0 30 .................................... AAATTTTTCAATCAGAAGCTTAACTTCCCT 163020 36 100.0 29 .................................... CCTTTCGGGGCGTTGTTTGTTTCGATGGG 163085 36 100.0 30 .................................... CAACACCGACATCAACGACATCACCACCGC 163151 36 100.0 30 .................................... TTGACTTGCCATTCACTTTTTCGTGAGTGC 163217 36 100.0 30 .................................... GCATAGGGCGAACAATACCAATGCGATGGG 163283 36 100.0 30 .................................... GGATTGATATTGCAGAAGATTTCTGCGAGG 163349 36 100.0 30 .................................... CCGTCTTGCGCGAAGGCGTATATTTTGCCG 163415 36 100.0 30 .................................... GTGATTCGACATACAGAGCCTGCGTCCTTG 163481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACTCTAGCATCAATCGTAACAGTCAATTGCAAAATTCCTATGGTAAGAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAAATCCCCTTGTTGTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //