Array 1 11743-10079 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKU01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N48699 N48699_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 11742 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 11681 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 11620 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 11559 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 11492 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 11431 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 11370 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 11309 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 11248 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 11187 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 11126 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 11065 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 11004 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 10943 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 10882 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 10821 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 10760 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10699 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10638 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10535 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10474 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10413 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10352 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10291 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10230 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10169 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10108 29 96.6 0 A............................ | A [10081] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29126-28000 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKU01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N48699 N48699_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29125 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 29064 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 29003 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 28942 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 28881 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 28820 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 28759 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 28698 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 28637 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 28576 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 28515 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 28454 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 28393 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 28332 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 28271 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 28210 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 28149 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 28088 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 28027 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //