Array 1 42278-46297 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRFQ01000017.1 Clostridium perfringens strain 79385-2 17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 42278 29 100.0 36 ............................. TAGGAGTTTTTGTATAATTTCTTATATGGGAAGTTG 42343 29 100.0 37 ............................. ATTTCCACATCATTAATGGTGGAAGGTAAGGGATTCG 42409 29 100.0 36 ............................. TTAATAATAAAAAACGTAAAAAAAAAGAGAGTAAAA 42474 29 100.0 37 ............................. TTCTTTGACTTAATAGACTTAGAGTTTTTACTACAAG 42540 29 100.0 37 ............................. AGATGATCTAACTCCAGTTAGAATTCAAGTTTGTCAT 42606 29 100.0 36 ............................. ATCTAAATTCATCTGTTATAAGAATAGTAGAACGTA 42671 29 100.0 36 ............................. TGAATATGTGTATTCATAAGTATTTTCTTTTAATTT 42736 29 100.0 36 ............................. CATGTGTTTTCTTTTTAGACATTACATTCTCACCAT 42801 29 100.0 36 ............................. CATTTTGAAGTTTCATATGTGAATATCTAGTCATCC 42866 29 100.0 36 ............................. CGCTTAGAGGTTGCATAGTCTTAATAATCATTAACC 42931 29 100.0 36 ............................. TTTGCTATGACAAAAATGATGTTATTTCCTAATTTT 42996 29 100.0 37 ............................. ATAATTATTGGTTAAGCTTATTTTGATTTAGCAGAAG 43062 29 100.0 37 ............................. CTAAAAAAAATTAATTGTTTTGTGCTATATATAAAAA 43128 29 100.0 36 ............................. AAGTTTCTATTGCTTTACATACTGAATTATCTTCTG 43193 29 100.0 36 ............................. TCTTTCGGCTTTTCGTTTCCAAAATAAACCGATTTA 43258 29 100.0 36 ............................. AAAACAAACAATTATGCAAAATAAGACCAAAAGCAA 43323 29 100.0 35 ............................. TCAGAATTAGTTTTTGTTAATACATACGACAATGA 43387 29 100.0 36 ............................. TGTTAATCTATTTTCTGATATAGGAAGTTTATTAAG 43452 29 100.0 37 ............................. TCATTCGTTTCATTTGATTCTAGTCCAAAGTTATTGG 43518 29 100.0 36 ............................. AGGAGTTTTGGATTAATCAACAAAGGATAGCAGATG 43583 29 100.0 37 ............................. TTGTACTGACAAGAAACTGTAACACCTTCATCACCTA 43649 29 100.0 36 ............................. TACTTTAAAGTTTCTTCTCTATAAGGTATCTTTTTC 43714 29 100.0 36 ............................. TTAGGAAAAGGACAAAAAGAAGAATTAGAAAGATAC 43779 29 100.0 37 ............................. TACAAAATAAAAAAGCACCAGGAACTTTAATTAATTC 43845 29 100.0 37 ............................. CCCCAACGGTTTCTAAATGTATTATCATTCTCTCCGG 43911 29 100.0 37 ............................. TCAATCAAATTTTTACTTTCACAAACTTTTTCATGAG 43977 29 100.0 37 ............................. GATTATGTGGTTAATAAAATTACTAATATTACAGATC 44043 29 100.0 37 ............................. TGTTGTGATAGATATAAACAATGTGAAGAAATAGAAT 44109 29 100.0 36 ............................. TCTTTACCTTGTTTAACTTCACTTATTATAGTTCCA 44174 29 100.0 37 ............................. TATAAATATCTCTTCACATATTCAAAGTTCTTAGTTA 44240 29 100.0 36 ............................. GTTCAAACTTTTTACCTTCATTAAGCATTACCAACC 44305 29 100.0 36 ............................. ATGTGAAACTTTCATAAAGGCGAAAGTTAAGCTTAT 44370 29 100.0 37 ............................. GTGTTTCCTTGCTATGCAATAGGAGAACACAAAGGAG 44436 29 100.0 36 ............................. AGCTGTATTTTTAGAGTTAAAGACTTTTATATTACT 44501 29 100.0 36 ............................. AGGTAAAGCTCCAACATCAGGAGTACTAACAATATC 44566 29 100.0 37 ............................. TGCAAAAACACATGGTTTATCATAAGTTTTCAAAAGC 44632 29 100.0 37 ............................. CCTTTTATTCTTACTGTATCTTCATAAATTTTGAATT 44698 29 100.0 37 ............................. TTAAAGGTAGCAGCTTTAGTAGTTATTTTGATTTATG 44764 29 100.0 36 ............................. AGCATTATTTTAACTTCATCCTCAACTGCAAGTTGA 44829 29 100.0 37 ............................. TTAACAATAGAAGGACTAACAGCACCAACACTACTAA 44895 29 100.0 36 ............................. ATTTAAGTAATGCAGGTAGAGAAAGTGGTAAAAAAC 44960 29 100.0 37 ............................. GGAAGTAATTCATATTCTATGAAAGAGAGAGAAGGAG 45026 29 100.0 37 ............................. ATTATAATTTCTGTTTTAGGTACTTTGGGTGTTACTT 45092 29 100.0 37 ............................. TAACCACGATACTGAGCAAAACTAGGAAAAGTATAAG 45158 29 100.0 36 ............................. TAAGTAATAATTGAAAAACTACAACTTCATGGAACT 45223 29 100.0 37 ............................. AGCTTAAATTGTTTTTCTATTATTACTCTATGTGCTC 45289 29 96.6 37 ............A................ ATTATTAGTTTTTCTCATTCTTCTTATTTGATTTTCG 45355 29 100.0 36 ............................. TTAAAATCATTAAAAGAACTTAAAACTTTATATTTA 45420 29 100.0 36 ............................. TTATTTTAGCTGTAATTAATTCTAAGTCATCTTCAT 45485 29 100.0 37 ............................. TAGTGATTACATAAAGTATTTATAATATCTATACCAG 45551 29 100.0 36 ............................. TTAGGATTCTGGACAAATCAAGATATATTAAGATAT 45616 29 100.0 36 ............................. CTGAGTAAAATTAGCTTGTCTAGCAGGTTTCTTATC 45681 29 100.0 36 ............................. AATGTAATTAAAGGGATAAAAGAAGGACAAACTATT 45746 29 100.0 37 ............................. ACAACAATATTAGTAGTTATATTATTTGCTTTAGAGC 45812 29 100.0 35 ............................. TACGAAATGATGAAAATAGTTATCTTGAGTGGAGA 45876 29 100.0 36 ............................. CAAATATATTTATAGGTTTATCATGGATTTCTATAA 45941 29 100.0 36 ............................. TGATGTACATATGGAGCATATTCAGCTGTACAGCCT 46006 29 100.0 36 ............................. GAATTAAATAAATATGAAATAGCATAATATAGAAAG 46071 29 100.0 36 ............................. GGATCAGGAAAGAGTTTGCACGTGGCACAAGAAATT 46136 29 100.0 37 ............................. AAAAAAATGGAAATTATTTAGGGTGAAAAATAGCTAA 46202 29 100.0 37 ............................. AAAGAAGCTGTATATAAAGTTTTACATGGTGCTGACA 46268 29 86.2 0 .................GAA....C.... | T [46295] ========== ====== ====== ====== ============================= ===================================== ================== 62 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGTATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTTAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //