Array 1 3281954-3280765 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACOJM010000001.1 Citrobacter freundii strain UCI152 scaffold00001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
   3281953	    29	 100.0	    32	.............................	TTGCTGGTGGCGTACTCAACGGAGAATTTGAC 	
   3281892	    29	 100.0	    32	.............................	GCTAAAAAAATCCCGAACGCGGAAATGCTCGA 	
   3281831	    29	 100.0	    32	.............................	GGCGCTTCTGCGCCGTCATAACGGATTTCTGA 	
   3281770	    29	 100.0	    32	.............................	CGGTAAATATCTCAAAAGCAACCGCTGGGCAG 	
   3281709	    29	 100.0	    32	.............................	CAAAACAGACTACCCCCCTTCAAATGAATATA 	
   3281648	    29	 100.0	    32	.............................	CAGACATATTCACCTTCGCCAGTAATCTCCGC 	
   3281587	    29	 100.0	    32	.............................	GGGCAACGACCAGTTTCACGTTTAATTTTCTG 	
   3281526	    29	 100.0	    32	.............................	TGCGCGAGTCCAGGCAGAGAAAATCAGGAACG 	
   3281465	    29	 100.0	    32	.............................	TGTTAAGCACGAGATTGATAATACAGGCCAAT 	
   3281404	    29	 100.0	    32	.............................	ATCACTATCGAGCACCACTAGCGGCGGCGCTC 	
   3281343	    29	 100.0	    33	.............................	GTTCGGGTGACAAATAAAGTTGAGCCGGTTCGC	
   3281281	    29	 100.0	    32	.............................	GTTTTATCTGGCGGCTTAATGCCGGTCATGAC 	
   3281220	    29	 100.0	    32	.............................	TGCCGGGCCGAGCTGATAGAGCAGATAGGGCA 	
   3281159	    29	 100.0	    32	.............................	AGAAGTATTTTTCTTGTGTAACGCCGCGACAA 	
   3281098	    29	 100.0	    32	.............................	TCAAGTCTTCACGATAAAGAGTTGGAAGACCG 	
   3281037	    29	 100.0	    32	.............................	CCGACCCGCAGAATGGCTTTGAGCCTTTCCCG 	
   3280976	    29	 100.0	    32	.............................	GCGTCTTATACGCGTTTAGAGGTCGGGTACAG 	
   3280915	    29	 100.0	    32	.............................	CATGAGTCTGGTTTTATTCAGTGCGGCAGCGA 	
   3280854	    29	 100.0	    32	.............................	AGAGGTATTTATGAAAGGTGCATTAGGCAAGA 	
   3280793	    29	 100.0	     0	.............................	|                                	
==========	======	======	======	=============================	=================================	==================
        20	    29	 100.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTGCTTGCTGCTGGAGAGATTGAACCGCCTCAGCCTGCACCGGATATGCTGCCGCCAGCGATACCGGAGCCAGAGTCGCTGGGTGATAGCGGTCATCGGGGGCATGGTTAATGAGTATGGTGGTTGTGGTCACAGAAAATGTACCGCCGCGTCTGCGGGGCCGCCTTGCCATCTGGCTACTGGAAATTCGAGCAGGTGTGTATGTGGGCGATACTTCGAAGCGTATCCGGGAAATGATTTGGCAACAGATCACACAGCTTGGTGGTTGTGGAAATGCCGTTATGGCTTGGGCGACTAACACAGAATCAGGATTTGAGTTTCAGACATGTGGTGAGAATCGGCGTATTCCGGTAGATTTGGACGGGCTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAGATTACGAGTTCTTTAATAATATGGAATTGTTATCTAAAGGTTGGTGGGTTGTTTTGTGTTAAAAAAATCCTTTTGGAACAAGAGTATAGTTTTAGA
# Right flank :  GAGGCTATCGGCACGCAGGCAAACGCCGTGGGGTGTTCCCCGCAGGCTCGGGGCAAAAATAGCCTTATAACTTCACCAAAAGTGGACTAAGGGTTTTTACCCGCTTTTGCCAGTTCCTTTACCAGCGGCAGCATAATGCGTACCACGTCGCGGCTACGGTGTTCTATCCTGCCCGGTAACGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGGTTCCAGTTGGTCGCTTCAACGGAGAGAACGGAAATGCCCGCGTTGTCGAAGACCTCTGCATCGTTACAACATCCAGTGCCTTTCGGATAGTCTTTGTTCAGACCTGGATTGGTGCTGGCAACAATACCGCGACTGTGCGCGATAGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//