Array 1 648949-649501 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483431.1 Campylobacter fetus subsp. fetus strain NCTC10842 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 648949 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 649014 30 100.0 36 .............................. AGAATTATATTTTATTACACAAGATTTAAGCCTTGT 649080 30 100.0 35 .............................. ACAACAGCACTTGGCTCTTGCCAAAACGATATACT 649145 30 100.0 35 .............................. TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC 649210 30 100.0 35 .............................. TACTAAATTTAAAGGTAGAAAACTTACTAATTATG 649275 30 100.0 36 .............................. CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC 649341 30 100.0 35 .............................. CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT 649406 30 96.7 36 ............A................. CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG 649472 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 99.6 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGCGATCATATTATAAGCCAAATGCAAAATATCGCAAGAGTAAATCAAGCTAGCAAATATGGCGTAAAACACTACAAAGTGGTAGCTAGGATTGATAACCGCACAAGTGATATCTGTAGAAGTATGAATGGACGTATAATCCCAGCCTCGCATATAGAAACTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTTGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACAGGCGTGGAAAGAGTTTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 661549-665060 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483431.1 Campylobacter fetus subsp. fetus strain NCTC10842 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 661549 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 661614 30 100.0 35 .............................. TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC 661679 30 100.0 36 .............................. ACCATATCATCTATGCTGATACTTTTGCCATTTATC 661745 30 100.0 34 .............................. GAAGCTAAATGACCATTAACAATAAACATATAAA 661809 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 661875 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 661942 30 100.0 36 .............................. AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT 662008 30 100.0 35 .............................. AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA 662073 30 100.0 34 .............................. TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG 662137 30 100.0 36 .............................. GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA 662203 30 100.0 36 .............................. TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG 662269 30 100.0 36 .............................. TTACACTCTTTAAAAATACTGCTATTATCTATTATC 662335 30 100.0 36 .............................. ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT 662401 30 100.0 35 .............................. CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG 662466 30 100.0 35 .............................. TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC 662531 30 100.0 36 .............................. TATCTTGCAGCTAGCAATATTCTTATTATATTTATC 662597 30 100.0 37 .............................. AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT 662664 30 100.0 35 .............................. TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT 662729 30 100.0 36 .............................. CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA 662795 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 662861 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 662927 30 100.0 36 .............................. CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT 662993 30 100.0 35 .............................. TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT 663058 30 100.0 36 .............................. AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA 663124 30 100.0 36 .............................. ATAGGATACTTCCAGCCATACAAAGAACTATAAACG 663190 30 100.0 35 .............................. TTTATCATAACGCCACTCATTTGCCACCGCCAAAC 663255 30 100.0 35 .............................. ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG 663320 30 100.0 36 .............................. GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC 663386 30 100.0 36 .............................. ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC 663452 30 100.0 35 .............................. AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA 663517 30 100.0 36 .............................. AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG 663583 30 100.0 37 .............................. AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT 663650 30 100.0 36 .............................. TATAAATAACTAATTTTCAAAAACAAAAATATATCT 663716 30 100.0 36 .............................. ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT 663782 30 100.0 35 .............................. TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT 663847 30 100.0 35 .............................. TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC 663912 30 100.0 36 .............................. GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC 663978 30 100.0 37 .............................. AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC 664045 30 100.0 37 .............................. TCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTT 664112 29 96.7 36 ..............-............... TTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAAC 664177 30 100.0 35 .............................. AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA 664242 30 100.0 35 .............................. TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG 664307 30 100.0 36 .............................. AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA 664373 30 100.0 36 .............................. GGGATATTGATTCGCGGAGTTGGAACTTTGTCCTAC 664439 30 100.0 37 .............................. AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC 664506 30 100.0 37 .............................. TCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTT 664573 29 96.7 36 ..............-............... TTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAAC 664638 30 100.0 35 .............................. AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA 664703 30 100.0 35 .............................. TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG 664768 30 100.0 36 .............................. AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA 664834 30 100.0 36 .............................. AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA 664900 30 100.0 36 .............................. GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC 664966 30 100.0 35 .............................. GTTAATGAAAACGAAATGGCTACTTATATAAAAGC 665031 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 54 30 99.9 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGTCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATCCCTTGCGGGACGATAGCCGGTTGGAAGAGGTCTGATGGTTACAAAAAAGATATATATCTTTTCTTTAAAAACCTAGACCCGGAATTTTTAATAGAGAATTTTGGGGCCAAAACTCCTATAATTCCTTTGCTAGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //