Array 1 91933-90971 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLTE01000015.1 Desulfovibrio sp. FSS-1 contig-100_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 91932 36 100.0 31 .................................... CGTAGACCAGCTGCATGAACGCTTCGGAGGA 91865 36 100.0 30 .................................... AGGTGACGAGGGAGTTGTGGTCCACGCTCG 91799 36 100.0 30 .................................... TCACCTGGGTGGGGTTCAACATCCGCACCT 91733 36 100.0 30 .................................... GCAGGAGAGGCTGTACTGATGGAAGCCCCC 91667 36 100.0 30 .................................... CTGGGCCACGAGCACGCCGTCGATTTCCGA 91601 36 100.0 30 .................................... ACGCCCAGCAGTGGAAGGGGTCTGTGCTTA 91535 36 100.0 30 .................................... TTTCCGCGTTGTGCTGGAGGTTGTCGTTGG 91469 36 100.0 30 .................................... ACCTCGGGAGGTGGTGGTGATTCCTCCCCT 91403 36 100.0 31 .................................... TCGCGCCCAGGGTGGCCGGGTAGACCTTAGA 91336 36 100.0 30 .................................... GAGGAGATGGAACCCCGCACGTGGGGGATG 91270 36 100.0 30 .................................... CTTGCTGGGCCTGGAAGAGCTTGAGTTTGA 91204 36 100.0 30 .................................... GCGCACCAGGCCGATGAGCTGCGGGTGCGT 91138 36 100.0 30 .................................... GAACAAGCGCTGCGGGACGCGCCCGGATGA 91072 36 100.0 30 .................................... ATTGACTAGGGCAGGAATGCGCTACTCTTG 91006 36 83.3 0 ...........................G.CGG.CC. | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 98.9 30 ATTGTAGCCGCTGAAGAAATGGGGTCAAGTCACAAC # Left flank : GAGGGCGAGCGGCGGGAGCTGTTCAGCCTGTGCGCGCAGACGGCGCGCAGCCTCGGGGAGCTGTACTGCGGCCAGCGCAACCGGATGTTTCTGCCCCGGTTCGAGGGTTTGGGCGGTGTGCCGTGAGCGGGAGGTTCCGTGCCATGTGGGTGTTCGCGCTGTTCGACCTGCCGGTGACGGCCGTGGTGGAGCGCAAGGAGTATACGCGTTTTCGCAAGGAGTTGAAGCGTCTTGGCTTCTCGATGCTTCAATACTCGGTGTACGCGCGGTATTGCCACAGCCGGGAATCCAAAGACGCGTTCCTGAACAAGGTGCAGGCGCTGGTGCCGGACAAGGGCGAGGTGCGGCTGTTGTCCGTGACGGACGCCCAATTCGGAAAAATGCGGGTGTTGGTGGGAAAAAAACGGCGAAAACCAGAGAAGGGGCCGGAGCAGCTCATGCTTTTCTGAGCTGCTCCGGCAGAATTTCTTCAGCAATTTCAGTGTCTTTTTCTTCAAGAG # Right flank : GGCCCCCTCCGCCCGCCCCCCCCTGCTCATCCCACGGCCGCCACGCGATCGTCACCCGGCTGTCCTAGGATGTCTGCGGGTCGGCGGTCCGGTCCTTTTCAGGAGGTGCGGCATGCGCGCGTTCAACGAGTCCGAGCAGGCCATCCTGCGCGTGGTCGAGGCGTTCGACGGGGTGGTGAAATACCTGGGCATCACCCCGGAGGAGCACCTCGTCTCCTACAGCCAGAAGCACCTGGAAAGGCTCCTGGACGAGGAAATCCTCGAACGGGCCAAGCTCCGGTTCTTCAGCGGCAAGATCAAGGGCGTGCGCTTCACGCGCGACGGGCTGGCCATCTGGAGGCTCTTCACCGGCCAGGAAACGCCCGAGGCCAAGCTGCCCGACGCGGGGCTCCTCGTGCGAGACCTCTACCTGCGCAACGGCCTCTCCTCCACCGACGAGGCCACCCCGCGCGACACGCTCCTCAAGCACCACTCCCGCCGCGCCCTGGTGGACGCCTTCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCCGCTGAAGAAATGGGGTCAAGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 3818-1104 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLTE01000004.1 Desulfovibrio sp. FSS-1 contig-100_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3817 29 100.0 32 ............................. TCATTCGTGACAGATGCACCACGGGGTTTTAG 3756 29 100.0 32 ............................. GGCAAACCCCTGCCCACCTGCTGGGGGTACTG 3695 29 100.0 32 ............................. TATAATTTTGTAGACCTGTGGGCACTAGGAAT 3634 29 100.0 32 ............................. TTGTCGTGGATATATACAGACTGCGGATAGTC 3573 29 100.0 32 ............................. GGCTCGGCGGGGTCGCGCCGGCCGGTCATGGT 3512 29 100.0 32 ............................. ACAACATGGAGGTCGCGGGCGTCGTCCTCCAA 3451 29 100.0 32 ............................. GCCACCGCCAGACGCCCCACCGCGCCGTCCAG 3390 29 100.0 32 ............................. CTGGAAAACAAACTCTGGTCCTCCCGCATCGA 3329 29 100.0 32 ............................. AACCCGCCCGTGCCCGTCAGGGTCTGCTCCGT 3268 29 100.0 32 ............................. GAGCGCATCATGGCCCAGAATCACGTTCAGGA 3207 29 100.0 32 ............................. GCCGACGCCCCCTTCGTGGTGGTGGACGCCCT 3146 29 100.0 32 ............................. AACGAACCGATGTTGGTGGTCGGGAGGCAGAC 3085 29 100.0 32 ............................. CCCGCCAGGGTGTTGCCCGAGGCCGACGTGGT 3024 29 100.0 32 ............................. CTGGTGGACACCATCCTCCAGGCCCCGCTTCA 2963 29 100.0 32 ............................. GATGGTATTTTCTCGCCCTTGGCGAGGAGGCG 2902 29 100.0 32 ............................. GCGCTGCGTGATCGCTGAACCGGCCGCCCGTT 2841 29 100.0 32 ............................. TCTGGGCAGTTCTGGGAGCAGCATCCCCAGAG 2780 29 100.0 32 ............................. CAACTGCTGTGCAGGCATGAGTGGAGACACCA 2719 29 100.0 32 ............................. CCGACCGTCATGGCGGCGAACGCCACCGTGGC 2658 29 100.0 32 ............................. CTCGCTGCGGTGGATCGCGCTCGGGTCCGGGT 2597 29 100.0 32 ............................. GCGACCACGGAGCCGTCGGGCGCGAACTCCAC 2536 29 96.6 32 ............................C CCTTCCGCCGCTGCCCCGGCCGCCTAAACCTC 2475 29 100.0 32 ............................. TCTCAGAACACCCAGCTTGCACCAAACGGGAG 2414 29 100.0 32 ............................. CAGGCCCCGGCGGTTGATCCGCTGGTTGAGCT 2353 29 100.0 32 ............................. CGCAATGTCCATCAAAAAAATAGGCCCCGGCT 2292 29 100.0 32 ............................. CGCGCCTGGGGCTCCACGAGGTCCAGGGCGAT 2231 29 100.0 32 ............................. TATGATTGCAGGAGAAACCCACCGAGAGTCCT 2170 29 100.0 32 ............................. TGGCTGCTCGGCGGGCTGTCCATCGAAGTGTG 2109 29 100.0 32 ............................. AAGTGCTGTTGGCAGACGTGGACTTTCACGAG 2048 29 100.0 32 ............................. TTATACAAGCCTTCATCATTTCCAAGCCAGAG 1987 29 100.0 32 ............................. GAGCGCTTAGATATGGATCAACGCGAGCGGAA 1926 29 100.0 32 ............................. TCATGACAAGGCTTGAAGAGATCAAGGCGCGG 1865 29 100.0 32 ............................. GACCTGGGCGCGGCGTCTGCCACGGGCTACCA 1804 29 100.0 32 ............................. GACGTTTTGACCAGGATCGAGGCCAAAGGGGA 1743 29 100.0 32 ............................. CTCCTGTCGCACGACTACGCCATCCTTGGCGA 1682 29 100.0 32 ............................. GTCACGTTCCACACCCTGCGACATACTTACGC 1621 29 100.0 32 ............................. GTCGACGATGAGGCCGGTCATCCCACCACCTC 1560 29 100.0 32 ............................. CCGTAGACCTCATCGGGCGTCCGAGCCTGGAG 1499 29 100.0 32 ............................. GCGTGTCCGCGATCATGGACCAGGACGGCAAA 1438 29 100.0 32 ............................. GACGTGGCGGCCCGCATCGAGCGACAGGAGAA 1377 29 96.6 32 .......A..................... GCGGGCAGCTTCGAGCTCAAGGACATGGCCAA 1316 29 100.0 32 ............................. CCCATGAACTCGATGGCTGCTCCCTCGCCAAC 1255 29 100.0 32 ............................. GACGTGGCGGCCCGCATCGAGCGACAGGAGAA 1194 29 89.7 33 .......A..............A.....C GGATTGCGCGGAGGTGATAGAAGCCACGTCGAA 1132 29 89.7 0 .......A..............A...T.. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.4 32 GTGTTCCCCGCGTGCGCGGGGATGATCCG # Left flank : GCGGATCATTCCGGAGATCGAGGAGGTGCTTTCCGCCGGGGGCTTGCCTGTTCCCGACGCGCCTGCGGATGCGGTGGGACCGGCCTTCGCGGACGAGGAGGGGCTGGGCGATGATGGTCATCGTGGTTGAGAACGCGCCGCCCCGGCTTCGCGGCCGGTTGGCGGTGTGGCTTCTGGAGATCCGGGCTGGGGTGTACGTGGGTGATTTTTCCGCCAAGGCGCGGGAGATGATCTGGCGGCACGTGGAATGCGGCCTGGAGGACGGCAACGCGGTGATGGCCTGGAGCGCCCGGAACGAGTCCGGCTTCCAGTTCCGGACGCTGGGCGCGAACAGGCGAATGCCCGTTGATTTCGACGGCCTGGAACTGGTTTCGTTCTTCCCCGTCGAGGATGCGAAAAGCTGACCAAACGTCCTGCGTTCTTTGACAATCGAGAGCGAGCTTGTTGGCACCCGAAAACCGCTTGAAAAAATCCAGTAACTGTGGCGTTTTGCCGGAAGA # Right flank : TGCGGGGGCTCAATGACGCCAGGCAGCCAAACATGTACCCCGTGTGCTGAGGTGATACCTACCCACTATCGCACGGTCACGCTCGAACGGCGCTCCTCCCAACAACGTGGGCACTGCCCCAACAGCCAACTCAAGGAGGTCAACATGTGCCTACCAGACCCTACCACACTGCCCCTGCTCTACCGATGGGAGGGCAAGCACCTGACCATGGACGTGCGCGACTACGGCAGCAGTAGCCGACTGGCCATCACAGGGCATGCACGATGGCGCAAGTGGAACCTGCTCAAAATGGTGCCGGGCCGCCAGCTCTGGCTCTTCAAATACATTGCACGCCTGTTTGAAGCCCTGGAACAAGCAGACGCGAACCAACAAGGCAGCCAAGGACATTGATGCCGCAGAAGACCTACGACGCCGCCAAGCAACGGCCCCTGGCTTTCAAGGTGAACTCAAATTCGCCCTGACTCCAGCGTTTGGGAATCCTAGCTGGCTTTGGCAGTCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //