Array 1 889087-887858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006955.1 Bibersteinia trehalosi USDA-ARS-USMARC-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 889086 32 100.0 34 ................................ TCTCTCCAGTAAGCTAAATCATTAAAAAATGGAT 889020 32 100.0 34 ................................ ACTTGATGAAAGTGCTAAGCGTATGGGGGTTGAG 888954 32 100.0 35 ................................ ACAGTCATAACGTTGGTGCAGCACAAAGCCGTTAT 888887 32 100.0 35 ................................ TTGCCAGTTTAAGTAATACCATTTCCACAGCAGCT 888820 32 100.0 35 ................................ GTGTTTTACCAGGATTTCTTTTGCTAGTGTCTCAG 888753 32 100.0 34 ................................ TAGTTCTTTACTTTAATGAACTAAAAGTACATAA 888687 32 100.0 35 ................................ GTACGTAGCTGGATACAAAAGGCGCAACCGTTAGA 888620 32 100.0 33 ................................ TTTTATGTACACTAAACGTATAATGAAGTCAAT 888555 32 100.0 35 ................................ TAAATAACGGAGCAAATCATCAAGACAACTATCAA 888488 32 100.0 35 ................................ AAAATGACGTGGTCGGAGCAATGCCGAAAAGCCAA 888421 32 100.0 34 ................................ ATCTATTGAAGGCTGATAATATGCTTGACTCTGA 888355 32 100.0 35 ................................ AATTAAGTACCGTACGTTGATGACGGAACTTGAAG 888288 32 100.0 35 ................................ GCTATGGGGGATTCGTCAATTTCAATTTTATGGTG 888221 32 100.0 33 ................................ TAAGCAGAATGAGTGATACTAGATGGAGTAGAA 888156 32 100.0 35 ................................ CAATTCGCTCTAAAAGCAAGCAATATGTCCAAAGA 888089 32 100.0 34 ................................ CATTGCAACCTGCCATTCACTACGAAATCTACAT 888023 32 100.0 34 ................................ CGATAAGCCGGTCAAATTACCGAAATGCTCCAAT 887957 32 96.9 36 ..........C..................... CTTGCGAGTGTTGATACGGTCAATTAGCGAGAAGTT 887889 32 93.8 0 ..........G..A.................. | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.5 35 GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC # Left flank : TCAACGATGATGATGCTGATTACTTACGATATTTCTTTTGATGATGCCGAAGGGCAGAAACGCCTACGCCGTATCGCCAAACATTGCCTCGACTATGGTATTCGCGCTCAATATTCGGTTTTTGAATGCGATGTCACACCCGATCAATGGGTTAAACTCAAACAAAAACTCCTCGATACTTACAATCCTGAAACAGACAGCTTACGCTTTTACCATCTCGGTAGCAAATGGCGTAATAAAGTGGAACACCACGGCACCAAGAAAGCGGTAGATATTTTTAAAGATACATTGATTTTGTAATATTGGGAACATCGCTAACGTCTGGTTCTCATCAAAATACGAGGAGGTTAGCGATTTTAATTTGTCCTTTAATAATCAATCAGTTAGAAATTTCTCCGAGTACTGCACATCTTATGTTACACTTAAATCACTCCTTTTATTTCAAGTTAGCGAATCACAGAGCGTTAAGCCTTGTGGCGCAATGCGTTGAAATATAGGGA # Right flank : ATCTTGAAGTATATCTGGATAGCGTCTCCAGCCTTGCATCCTCCACCACGAGGTTGTCGCTTGAAATATTGCATAAGAAAACACAAAACAATCTATATTTTCTGCTGAAGTAGCTAAATATCCGTTATAATGTCGCCATTTTTCATCTTATCTTAGAGTAAAAAATTATGATGATGCACTACTCCTCTCAATTTAACCATGCAAAAGTATTAGTGCTTGGTGATGTGATGCTAGATCGTTATTGGTTTGGATCCACAAATCGAATTTCCCCTGAGGCACCGGTTCCTGTTGTCAAAGTGCAGGAAAATGAAGAACGTGCAGGTGGTGCGGCGAATGTCGCGATGAATATTGCTGCGCTTAATGTGCCTGTCACCTTACATGGCTTAGTTGGGCAAGATGATGCAGGTTCAGCATTAGATAAATTATTAAACTCTCACCAAATTCAAAACCACTGCGTAGCATTGGATAGCCATCCAACTATCACTAAATTACGCATTCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 900136-898103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006955.1 Bibersteinia trehalosi USDA-ARS-USMARC-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 900135 32 100.0 35 ................................ TTTAATGGCGACTTGTTCCCAGTGATGACACGGTT 900068 32 100.0 35 ................................ AGGTTAAATCTAGACGAGATAATGGAGATTGCCAA 900001 32 100.0 34 ................................ TGTTAAAAATAAACCCTGCACGGGGCAGGGTCGG 899935 32 100.0 34 ................................ ACCGAAACCGAAATCTGGGCAAGTGAGAGCGACA 899869 32 100.0 36 ................................ ACATTAGGAACGCAAGACCAAGCCTCATTACAAGGC 899801 32 100.0 36 ................................ TTGCAGAGGATAGAAATTTCCGCACCCATATTTTCG 899733 32 100.0 34 ................................ TTGATATTATTGATAATATGGAAAAAGAGATGAC 899667 32 100.0 34 ................................ ACTCGAAGCCTTAGAGCCGGATTTTGTGCCAATC 899601 32 100.0 34 ................................ AAATGAAAGCGTATAAATCTCGCCACTTTGCAAT 899535 32 100.0 34 ................................ TGGCGTGGTAAGTACCGATAACATTCCCGAAGAC 899469 32 100.0 34 ................................ TATTACAACATTTGACAATCAAACATTATGGGAG 899403 32 100.0 35 ................................ CAAAGGTGCTATTGTACTTAGTAGCAAGTCAATTC 899336 32 100.0 34 ................................ TAAGCAATTATAAAGAAAGAATAAAAGACGTTGC 899270 32 100.0 37 ................................ ATCACCGTCCAACTTACCTTTGTTGAATGCTTGTGAG 899201 32 100.0 34 ................................ TAATATGCCCTTGCATAAATTCCACTTTGCCGTG 899135 32 100.0 34 ................................ CTGCCGAGTAATAAGCCAAGCAGAATTTCAAGCA 899069 32 100.0 34 ................................ TTGTGAACATCGAGCAAAATATCGGTCATTGCAC 899003 32 100.0 35 ................................ ATCATAAGTGGCTTTACGAGTGGCTCTTGGCTCTT 898936 32 100.0 34 ................................ CCTAGCCCCCAAGCACCTTTGGCAATAGTCTGTG 898870 32 100.0 34 ................................ GAGATTTAGTAATTGCTCCATTGAAACGTGGAGA 898804 32 100.0 37 ................................ GTGCCGAGACTTGCCGGTGTATCGGTCACAGCTAAAC 898735 32 100.0 36 ................................ ATAGCCGCCCAGCTCCTTAATCTTATCCAGCGACAT 898667 32 100.0 35 ................................ AAATTATGCCTTAATAATACTTTAAGTTTTTAAAA 898600 32 100.0 35 ................................ TCTTCTGAGCTTTCCAGGCATTAAAACCTTGCTCA 898533 32 100.0 34 ................................ TCAGGGTCGCATAACTCCACTTTGCAGCGATGTT 898467 32 100.0 34 ................................ AGTGAATATACCGCTCAGCGTGCGTTAGAAAATC 898401 32 100.0 35 ................................ GCCGTTTAGATAACCTTGTCAGGCTTGGCACGATT 898334 32 100.0 34 ................................ ACTATTTTTCACGTTATAGAGATCGTATTAGCAA 898268 32 100.0 34 ................................ ATTACCCTGCCAAATTATCGGTTGGCTGAGTTCG 898202 32 100.0 35 ................................ TCATCGGGCTTTAAGGTCAAGGCATTATCCACTAA 898135 32 90.6 0 .........................C.A...T | G [898113] ========== ====== ====== ====== ================================ ===================================== ================== 31 32 99.7 35 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Left flank : AATCCTCCAATTATTGTGATTCACGGTAACCAAATTGAGCGTTTACCAGATAGCTATAAACGTTATTTATCAAATTATTATCGCAAGAGCCTAAAAATTATCGGCTCACCGATTCGAGTGCTATTCCAAGAAGGTAACAACCCCTTTGCCGGCAAGCGCAATAAACTCACACCAAGCCAGCTTCGAAAACGTAAACGCTTGATGAAGTTTATTAAGAAAAATCGGAAGTAACTTATTTGCACCTCAATATCCTTAGTATTGAGGTGCTATTTTCTATTGATTTTCTCAATATATCCTACCGATGTATAATTCGCTATCTCGGAGTTCTCTCCAAAATCGTATTAGGTTAGCGAATTTCATTTTTCCTCAATAATTCAATATGTTAGCCTATTCACGCTATTTTATCTTTAACCTTATGCTATACTGAATCAGCCTATTTTAGGATATTAGCGAAAAAGAGGTTTTCGAGCCTTGATTTGTAATGCTTTTTACCATAGGCA # Right flank : ACTTTTTCCACAAACAAGAGTCTATTTAATGCTTACTCTATATTGCAAAATAATATGTATATCACAACGTCCCCTTTGATTAATCTAGATAGCATGCGATCTTAGGAATAGGCATTGTAAGTTCTTGTATATAATTGTAGTATACATCATCCATTCTCTGCATAAATTTACGAGCTTTAATGAGTAAGACCGAATTTATCGCCCATGTTCGAAAATCTAACAAACAGTTACAGTCCGTTTCAAACCATCTTTTAGAAACTGCCTCAATCGCAAGAACTTTGGCTGCTAAATTAGATTTAGCTGATGCTGGGGAATTACTCGGTTTAATGCATGATTTTGGTAAATATTCTAAGAAGTTCCAAACATATATTCGCCACGTAACCGGTATTTTAACTTACGCAGATTTAGATAGCGAAGATGAAAATAATGGAGGGGATCATTCAACTGCAGGCGCTCAATGGATTTATGGTCGTTTAAGAAAATTGGGCGCAGCTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1505706-1506137 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006955.1 Bibersteinia trehalosi USDA-ARS-USMARC-189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1505706 32 100.0 34 ................................ ACTTGCTCTGTCTAAGGTTTCATAAGCAACTTGT 1505772 32 100.0 35 ................................ GACAGAGCGGTATTACAAATAAATCGTGTTGCTTG 1505839 32 100.0 35 ................................ ATTTGCTGATAGTGGCTATTTAGAGACGGCAGCAA 1505906 32 100.0 35 ................................ AAATGGAATGAAACGCAAATCCCTGTTTCAGAAAT 1505973 32 100.0 35 ................................ CGCAACTTTATGAAAGAACACGGCGGAGTTCGTGC 1506040 32 100.0 34 ................................ GGCAAAGGTTGGGTAAATCGTGTAGCAGGTAATC 1506106 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 35 GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Left flank : ATGACTGTCGATCTTGGTATTAATAGTAATGATAAAGTGGGGGATGAAGCTGAGCTTTGGGGGGAAAATTTGTTAATTGAAGAAGTCGCTAATGCCATGGGGGTAATCAATTATGAATTAATTACCAAATTAACCCCAAGAGTGCTTTTTGAATATCTTGATTAACGCTAGCACATTTAAATAATCTTGTAACATCATTCAAAAAAAGGATATTACACAGCGTTGAATAGTTTGCAAAAAATTCCCTGAAATAGACCGCTTACATAAGATAAAGCAACATTACCTCCTAATGTTTCATGTTTATTTCTCTTCTCGCTAACCCTCGGTTCTCAGCAAAATACCAAGAGGTTAGCGATTTATTATTTCCCTTACGAATCAAGTTGTTACAAACTTCCATCATATAACAGATATTATGCTACACTATAAATCAATCCCCATATTTTAAGCTAGCGAATTGTTAGGGTTTAATCCTTGTGACGTAATGCTTTGAGATATAGGGA # Right flank : CTTAATGGTTTTGCATACCGTTACCCCCTCAAGTAGCAGCTACCTACGGGTAGCTGCCATTCTATTTCTAGCAAAGATGAATGTTACTCAAACAAATCTCCAAGCAAGAATTGCAATACCGAATCCATTCTTAAGTGAGGAAGAGCTTGGTCAAAGTCGATTTTTCTAGGTTCAAACTGATCGAAATCGAAGGTATGATTTTGCCAAAAATCCGAATTCGGTAGCCGATTGGGGACGCTCCCTGCAAACTGGGTTACCTGTCGCTTATCCTTTGTCCGTACCCCTCGAATAGCTTTAAAGCTCTGCCCATTTTCACTCACCGTCACGGCTTCGGTCGCTCGAATTGCAGAAATGGCTTGATAAGCTGTTTCAATCCCGTCAAATTCAGCATGTCTGCCACCTTCCTGCACTAACTGTCGCATAAGACTTTCTAAATTTGGAAGCTGATCACTTGTGATGTGATCGGCTTTAGTTGCGGCAAATAGAAGTTTATCAATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1612756-1611730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006955.1 Bibersteinia trehalosi USDA-ARS-USMARC-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1612755 36 97.2 30 ...............T.................... GCCGATTTTAAATTCCATCTCAAGCTTTTC 1612689 36 100.0 30 .................................... AAAGTCCCACGTCAAAATAATACTTGACAA 1612623 36 100.0 30 .................................... ATGCTGACAAATTATTAGGCGTATGGCAAC 1612557 36 100.0 30 .................................... GGGCAGTTGCAAGACATGTATCAAAATCTT 1612491 36 100.0 30 .................................... CACAATCAAAAGCGATTGTTGATGATTCAA 1612425 36 100.0 30 .................................... CGTACATTCGGTTATACATCAACGCTTAAA 1612359 36 100.0 30 .................................... CCTCTTTGAGATGTTCCACGAACCACAACG 1612293 36 100.0 30 .................................... CAGTGTATTCGCATTGGAAAGCGTAAAAGA 1612227 36 100.0 30 .................................... TATTTTCTGTACCACAACCTTGCCTTGCTT 1612161 36 100.0 30 .................................... CGTACATTCGGTTATACATCAACGCTTAAA 1612095 36 100.0 30 .................................... CCTCTTTGAGATGTTCCACGAACCACAACG 1612029 36 100.0 30 .................................... CAGTGTATTCGCATTGGAAAGCGTAAAAGA 1611963 36 100.0 30 .................................... TATTTTCTGTACCACAACCTTGCCTTGCTT 1611897 36 100.0 30 .................................... CGAAGTAAAAATCATTGGTTATGTAGGGCA 1611831 36 100.0 30 .................................... AAGTAAATATTACACAGGAATTATGGGAGA 1611765 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGACGCTATCCTCAACCGTGCGTATTGCTTATATGGTATTACCGCCTGAATTATTAACACGTTTTCATCAACAATTGGGCTTTTACGCCTCTACGGTTTCAAACTTTGAGCAATATGTGCTAGCGGAATTTATTCAGCAAGGCTATTTTGAAAAACACATTAACCGAATGCGAGCCTATTATCAGAAAAAACGAGACCATTTGCTCTTTTCGCTCAAAAATAGCCCGCTTGCAGAAAAAATTACGATAAAAGAAGAGAATGCAGGGTTGCATTTTATTGTGCAATTTCACACGGAGTTAAGTGATGAACAAATTCTGCAATCTGCCAATGAGCAAGGTATAAAGATGGTGAGTTTAGCTCGTTATTATCAAGATAAAAGCCAAGCACCGAAAAATGCATTTGTAGTGGGTTATTCTAACCTAGCAGATAAACAAGTTGATGAGGTGGTGAGATGGTTGAAAAATATATTTAGTCGTAGAGTGCTATAGTTATATGTAGG # Right flank : AGAGTGGTATGAACGCCTTATGTTATAAGGGGGTATTGCGTTTTTAAGCGATTAAAAAACGTGAAAAAATACCAAACAAGCGGTCTGTTTTTGGAAATTTTTTGCAAGATTTTGCAGAGTTTTTTGAAAACAGACCGCTTATTTTTCTCTGTTTTTTGTGGAAAATTGCCGATTTAGTTTATTTGTGTGAACAAAATATCGCCAATTGAACAAAAGTTTTTGTGTAGCGTAAAAAAAATTTTCTTATGGTTGATTTTATTAAAAAAGTAGCAATTGGTTTGCATTGACTTTTTCTTCTTGTGGTTTCAGTTCCCCCACGAGCAACAGCATTGATGTGAACTGTTTTTCGGTGATTTCCAAGCAACGCACGGAGCCTTCCTCCGGCAAATGTGCCGTCAGTCGTTTATTGTGCTTTTCTAATGAATCTCTTCCTCGCACAATGCGGGTGTAAACTGAAAGCTGTAACATTTGATAACCGTCTTTAAGTAAAAATTGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //