Array 1 3096313-3096105 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU916613.1 Mycobacterium canettii isolate Percy975 chromosome McanPercy975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 3096312 32 90.6 44 NNN............................. ACGCTTGACAATGCGGTTGTCGCGCGCCTTTTTCCAGCCGAGGT 3096234 30 90.6 0 .............................T-- - Deletion [3096205] 3096209 32 100.0 41 ................................ ACTAGTTGACGCCAAATGTTTGGACTGTGATCAATTCAAGT 3096136 32 84.4 0 ...........................NNNNN | ========== ====== ====== ====== ================================ ============================================ ================== 4 32 91.4 29 CGTCAGACCCAAAACCCCGAGAGGGGACGGAA # Left flank : NNNNNNNNNNNNNNGACCCAAAACCCCGAGAGGGGACGGAAACCTTCGATTGTGCCGCCGCGGGTTTCGTTCACGTCGTCAGACCCAAAACCCCGAGAGGGGACTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCTTGCCAAGGGAGGTGCTGGTGTGCTTATGCCTAACAGGTCGTCAGACCCAAAACCCCGAGAGGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACCCAAAACCCCGAGAGGGGACGGAAACTCCCCGGGCTGGGGCGTGTGTTCGTAGTCGCCTAATGTCGTCAGACCCAAAACCCCGAGAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGACCCAAAACCCCGAGAGGGGACGGAAACACTGGTTGTTGCCCGGCGACGGCGGCGCGTTGGCGTGTCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGACCCAAAACCCCGAGAGGGGACGGAAACACGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAGACCCAAAACCCCGAGAGGGGACGGAAACTTCTGCGCGGCGATCCGGTCATGACGAGCCCGCAGGTCGTCAGACCCAAAACCCCGAGAGGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-1.34, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCAGACCCAAAACCCCGAGAGGGGACGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 3096801-3096602 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU916613.1 Mycobacterium canettii isolate Percy975 chromosome McanPercy975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 3096800 31 93.5 34 NN............................. CTTCGATTGTGCCGCCGCGGGTTTCGTTCACGTC 3096733 31 90.3 2 .........................TC.G.. CC Deletion [3096701] 3096707 31 100.0 44 ............................... CCTTGCCAAGGGAGGTGCTGGTGTGCTTATGCCTAACAGGTCGT 3096632 31 80.6 0 .........................NNNNNN | ========== ====== ====== ====== =============================== ============================================ ================== 4 31 91.1 27 CAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCAAAACCCCGAGAGGGGACGGAAACCTTCAACGACGCTGTATTGGGCCATGTGGGCTGGTCTTTCAGTCGTCAGACCCAAAACCCCGAGAGGGGACGACCCAAAACCCCGAGAGGGGACGGAAACTTGGCGTACATAGCGAGCTGTGCGGCAGTAGAGTGCGGGTCGTCAGACCCAAAACCCCGAGAGGGGACAGACCCAAAACCCCGAGAGGGGACGGAAACTCGATGGCGGCGCGGTTGCGGATGTGGTGGTCGCGTAGCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACCCAAAACCCCGAGAGGGGACGGAAACTCCCCGGGCTGGGGCGTGTGTTCGTAGTCGCCTAATGTCGTCAGACCCAAAACCCCGAGAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACCCAAAACCCCGAGAGGGGACGGAAACGCTTGACAATGCGGTTGTCGCGCGCCTTTTTCCAGCCGAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTAGTTGACGCCAAATGTTTGGACTGTGATCAATTCAAGTCGTCAGACCCAAAACCCCGAGAGGGGANNNNNNNN # Questionable array : NO Score: 3.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.29, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 3097985-3097789 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU916613.1 Mycobacterium canettii isolate Percy975 chromosome McanPercy975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 3097984 24 100.0 51 ........................ AACGCGGTGCTCGATGCGGCCACTAGGCCGCGGCCAACTCGGGTCGTCAGA 3097905 24 100.0 6 ........................ GGGGAC Deletion [3097876] 3097884 24 100.0 48 ........................ CGGAAACCAACAAGGTCTACGCGTCGAGGTCCACGGCTCAGAAGTCGT 3097812 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================== ================== 4 24 100.0 35 CAGACCCAAAACCCCGAGAGGGGA # Left flank : ACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTATGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATCGAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTTGGTGATCTTCCATGACTTGACGCCGTTGACCGCGATGTCGTCAGACCCAAAACCCCGAGAGGGGACGAGACCCAAAACCCCGAGAGGGGACGGAAACATGCCCGCTGGTAGCGGCCCCGGCGGCGCCGAGAAGTCGTCAGACCCAAAACCCCGAGAGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCAAAACCCCGAGAGGGGACGGAAACTCGGTGCTGACCCCATGGATGCGAAGCGTAGACCTCTGTGTCGTCAGACCCAAAACCCCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCAAAACCCCGAGAGGGGACGGAAACTTCAGTAAATTGCAGCGACGGGCGAATCCAGCAACCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAGACCCAAAACCCCGAGAGGGGACGGAAACATGTGGCGATTACGCCTGATCAGGCGAAGGCGAGTCGTCAGACCCAAAACCCCGAGAGGGGACNNNNNNNN # Questionable array : NO Score: 4.40 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-1.25, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGACCCAAAACCCCGAGAGGGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 3098278-3098085 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU916613.1 Mycobacterium canettii isolate Percy975 chromosome McanPercy975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 3098277 23 100.0 51 ....................... AAACTTGGTGATCTTCCATGACTTGACGCCGTTGACCGCGATGTCGTCAGA 3098200 23 100.0 7 ....................... GGGGACG Deletion [3098171] 3098178 23 100.0 48 ....................... CGGAAACATGCCCGCTGGTAGCGGCCCCGGCGGCGCCGAGAAGTCGTC 3098107 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =================================================== ================== 4 23 100.0 36 AGACCCAAAACCCCGAGAGGGGA # Left flank : ACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAATCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTATGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATCGAGTCGTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACCCAAAACCCCGAGAGGGGACGGAAACGCGGTGCTCGATGCGGCCACTAGGCCGCGGCCAACTCGGGTCGTCAGACCCAAAACCCCGAGAGGGGACCAGACCCAAAACCCCGAGAGGGGACGGAAACCAACAAGGTCTACGCGTCGAGGTCCACGGCTCAGAAGTCGTCAGACCCAAAACCCCGAGAGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCAAAACCCCGAGAGGGGACGGAAACTCGGTGCTGACCCCATGGATGCGAAGCGTAGACCTCTGTGTCGTCAGACCCAAAACCCCGAGAGGGGACGGNNN # Questionable array : NO Score: 4.45 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-1.20, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGACCCAAAACCCCGAGAGGGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //