Array 1 1963-8953 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPN01000947.1 Xanthomonas oryzae pv. oryzae strain YN11 scaffold946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1963 31 100.0 35 ............................... GTGAGATCGGCCGCGTGCTCGCCCAAGGTGAGCCG 2029 31 100.0 37 ............................... ACATTAGCATTTGACGATTCTACTGGCGATCTGGTCC 2097 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 2163 31 100.0 37 ............................... CGCCTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 2231 31 100.0 33 ............................... TCGCCAGATTCCCGACGAACACATTGCTTTGCA 2295 31 100.0 35 ............................... TCCTGGTTGGTGTGGTATAGAATAACAGGGCTGAC 2361 31 100.0 34 ............................... CTCTAGTGTTGTGCTGGGGTCAATTTTCGATGAG 2426 31 100.0 34 ............................... TCACGTTTTGGCATCCTTGTCAATAGACAACTCC 2491 31 100.0 33 ............................... TAAGGAGGCTTTTATGCCAGAAACAAAACGGCT 2555 31 100.0 35 ............................... GACACTTAACCGGGTGAGAGATCTCCCAGACACTA 2621 31 100.0 35 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGTC 2687 31 100.0 35 ............................... CGCCTTTGCCATCTAATGCACATGATGGCCTAGCT 2753 31 100.0 34 ............................... CAGCGCAACATGGTCACGGTCTTGGCCGAAGAGC 2818 31 100.0 34 ............................... TCATGGCCTGACGTCCTTGTCAAGCAATTTTGAA 2883 31 100.0 35 ............................... CCAAGCTATTGCCAGCTTATTGTTGATGGGTACAG 2949 31 100.0 35 ............................... ATTGTTCCGGCAACGCACCTCAACGCCATAGCGAT 3015 31 100.0 35 ............................... TTCGTGTGAGTGTGAAAAATGAAGCCCGTGAACTT 3081 31 100.0 36 ............................... TTGAGACCTGGCTATGACTCAGTTGCAATGCAGATC 3148 31 100.0 35 ............................... TCGGCATCCCGAAAAACAAGCTGCGACTTGAAGGG 3214 31 100.0 34 ............................... AGCACTTTTCCGCCATGCTTCGCGATGAGGTGGG 3279 31 100.0 35 ............................... AGCCGTGCTGGGATGTTCTTCCGGCGCCACGTGCT 3345 31 100.0 36 ............................... ATCGGCATGTCCACCAAACTGCAGGAGTGGTTGGAT 3412 31 100.0 34 ............................... TGAGAAAGCAGCTGCCAAGGACAGCGAGGCGATT 3477 31 100.0 35 ............................... TCCTGAACCTGATCCGGCCGTTGCCGACGAAGCGC 3543 31 100.0 36 ............................... CTGAAGATTGCAGATTATCCAGCAGAGGTGCACGAG 3610 31 100.0 34 ............................... CACGGTCCCCTTGCTCGCGCCGACGCCGCAGCGC 3675 31 100.0 35 ............................... TGTTTTGCTGCTGCACGTGCATCTAAGGCTTCTTC 3741 31 100.0 35 ............................... CTCTGGCTCAACAACGAAGGCGACACCAAGAACAT 3807 31 100.0 34 ............................... TCCCCCTATGCATCTCAATTATCCTCAGCAGGAT 3872 31 100.0 35 ............................... TGGTGCAGGTACAAGGAGGGCAGAACCCACTGACT 3938 31 100.0 35 ............................... CGCCGTCAATGATTGGTCACAGCAGTGCTGGTACA 4004 31 100.0 34 ............................... CAGCGAGATGAGGCTGAGGCACGGGCACGTGTGG 4069 31 100.0 33 ............................... AGTACCAGAGTACCGCAAACAGATTAACAAGAC 4133 31 100.0 33 ............................... ACTGTAAAGGCCCTAATCCAGGGGCAGGCCAAT 4197 31 100.0 33 ............................... CAGAGGGTAGGTGGTGTGCCTATTTATTGGCAG 4261 31 100.0 35 ............................... TCGAGCTGTGGATATGCAAACTCAATTTGACCAGT 4327 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4392 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4457 31 100.0 35 ............................... AGCGCAACATGGTTACGGTGCTGGCTGAAGAGCGG 4523 31 100.0 33 ............................... ATTGATGCTTGCATTTACAACATAGGTTTCGCT 4587 31 100.0 33 ............................... ACAATCAATGACTGCCCACCAAAGTTGCCCCTG 4651 31 100.0 35 ............................... CATACTGCACCATTTGAGTCGCCCACGCCTGTATC 4717 31 100.0 34 ............................... TAAAGTAGGACTTCCCAAGGTTAAGAGACACACC 4782 31 100.0 35 ............................... ATGTTAAATCCAACCAGTACCCGGCAGTTATTGAG 4848 31 100.0 35 ............................... TTTTGTTCTGTGGATTTATGGGCGCGCTGTGTGGT 4914 31 100.0 34 ............................... TGGCCCTTGTGTTGCGGAGGATACGTTTTTCCTC 4979 31 100.0 35 ............................... TTCTTTGGGATTCCAAGGAATCTTGAGTTAGGCTT 5045 31 100.0 34 ............................... ATGTTCAGCCGGATCGAGTTCACGAAGATCAACT 5110 31 100.0 34 ............................... ACGACCACCTGGGCGGCCAGCTTGAGCGACCGCA 5175 31 100.0 37 ............................... CTCGCGGTACCACCCGCGCCAGTAAGGGTACTGATCC 5243 31 100.0 34 ............................... ATACGCCACTGAATTAGGCATCAGGTCTAACCGG 5308 31 100.0 34 ............................... ACGTTAACTACCGCACGCAGGTAGCCGACACCCC 5373 31 100.0 35 ............................... AAGTCCTTGGCCGAGCGTATCGCAAGGCACTGCAT 5439 31 100.0 35 ............................... ATAGCCGTAGTATGGGTTCACTTCGGCCACGGATA 5505 31 100.0 34 ............................... TGGCGAGACTGCCACCAACTCGCGACGGTATTGT 5570 31 100.0 34 ............................... ATGATCGTAGGTCCTATGTGGGTAGGTCGTGTAG 5635 31 100.0 36 ............................... CTCTAGCGTCTGTGAAGGATCGGGAACGCAAGGCCA 5702 31 100.0 35 ............................... CCGATCTGCGCGGTAGGAGCGCGCCGGTCTGGACC 5768 31 100.0 36 ............................... TTTAGCTTTCAAACCGCTCTGCGCCAGCAAGCGATT 5835 31 100.0 35 ............................... TCGTGCTCCGTCTCAACCAGATAAACCGCATAGTC 5901 31 100.0 33 ............................... ACTGCGCGAGTAAAGCGTTATCCGTAGGGGCGC 5965 31 100.0 35 ............................... AGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTG 6031 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCGCGCGGTGTCG 6097 31 100.0 34 ............................... CCGCAAGCGCTCACCGCTGCGCTACACGCGACAC 6162 31 100.0 35 ............................... TGGGTGATGCGCGTGACCTTGTCGGCCGCGAGATC 6228 31 100.0 34 ............................... GATGTAGATGCGCGTGCACTGCGGGTAAGCGGCC 6293 31 100.0 34 ............................... CAGGTCAAAGCATCAAAGGCGGCGTTGTGCGCGA 6358 31 100.0 35 ............................... TTCTTCCTTGCGCGAGTACGGCTTACGAAATACGT 6424 31 100.0 34 ............................... TCGAATACCGAGCCCGAACTGGTGCGTGACGTGC 6489 31 100.0 35 ............................... AAACCAGACGCCCAGAAACGCAAGCGTGCGATTGT 6555 31 100.0 36 ............................... ATGACCTTAAGCTCCGTACTCGCGGTCCGCAGGATT 6622 31 100.0 34 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTA 6687 31 100.0 36 ............................... GCAGCTAGCCGCTTGGCGTTTTTTTCGTCCCGAATC 6754 31 100.0 35 ............................... CTGGGTCTGATGCTTACGATGCACGCGCGCCAGGA 6820 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 6886 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 6952 31 100.0 35 ............................... GCGCACTTGTTCGATGTACTGCGCGCGGGATTCTT 7018 31 100.0 35 ............................... TTTGCCGGAGTACGGGCGAAACCCACGCCCGACGA 7084 31 100.0 34 ............................... GGCCGCCGAGATATCAACCCCGATGCCGCGCATG 7149 31 100.0 35 ............................... GCCGACACGAAAGCTCTGAAACGTTGCATTGCTAA 7215 31 100.0 35 ............................... ACCTACGACGGCTCGTCGACCTACGACGGCTTGCA 7281 31 100.0 35 ............................... ACATCGCATCGACACACGGGCGTCTCAACCGGCAG 7347 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 7413 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 7479 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 7544 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 7609 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 7676 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 7742 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 7807 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 7874 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 7940 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 8004 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 8069 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 8135 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 8201 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 8266 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 8332 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 8398 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 8464 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 8528 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 8595 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 8660 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 8726 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 8791 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 8858 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 8923 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 107 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //