Array 1 205401-205145 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814491.1 Rothia sp. HMSC072E10 Scaffold306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 205400 36 100.0 36 .................................... TGGTTAGGGTCTGCATGTTTCCCAAGAGCGCGTTGT 205328 36 100.0 39 .................................... TTGGTGGGGGTGACATTCAGACCATCGGTGGTGTGGCCA 205253 36 100.0 37 .................................... ATTGGCTGGAACCCCGAATACACCGCGTTCCCATCGA 205180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 38 GCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAAT # Left flank : NNNNNNNTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATGTCTTCTCGGTCATTAGGTGCCTTCCTAGTTGTTCATGCTGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATGCACCCGCCGAGCCGCTGGCTATCGCGCCCGGTTACCTGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATACCCACAGGCCGAACGCCTTAGCGACACTCTCAGCAGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATAAGAGTCTGTTCCAAATGTTCCGCCAGCTTCGCGTTGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATAATACGGGAAAAGAACCCCTTAGCTGACTTCTTCTCT # Right flank : AGCTACCCGAAACTAGCCCGCAACCATGCGGCAGAAACGGGTGCTTCGCGAGAACCTCGCGGAGGCTACACGCAAAATTATACACTCCAACCACATCTACCCCCGCATAACTCCCTGACAAGGGAAGAAACCATGCGAGCGACACGCCATGTTCCCGTCACGTACCAGGTTCTCGCTCACACAAAGACCCCCGCCGGGTGCTTCCTAAGCGACCCGGCGGGGGTCTTCACGTATGGGAAGGGTTGGCGCGGTTCAGGTAAACCGGGCGAGCTTCGAGTCTCACGGGACTAGAAAGAACAGCGCATCAAAACCCGAGCCGGCCAAAGCTCGGCCCCGGCGAACAGCGGAACTAGCGCTCCGCCTCCTCACCCAGCAGGCCTTCACGAGCCAGCGCGGTCAAACGAGACACCGCGCGGAAATACTTCTTCTGGTAACCACCGGCCAGCATCTCCGGGGTAAACACCTTGTCAAAAGGCACACCCGAAGAAACAATCGGCAGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 205639-205898 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814491.1 Rothia sp. HMSC072E10 Scaffold306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 205639 38 97.4 34 ....................................T. CTGAGAGTGTCGCTAAGGCGTTCGGCCTGTGGGT 205711 38 100.0 36 ...................................... GTAACCGGGCGCGATAGCCAGCGGCTCGGCGGGTGC 205785 38 100.0 38 ...................................... CATGAACAACTAGGAAGGCACCTAATGACCGAGAAGAC 205861 38 86.8 0 .................................NNNNN | ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 96.0 36 ATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAG # Left flank : GTAGCTATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTCGATGGGAACGCGGTGTATTCGGGGTTCCAGCCAATATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTGGCCACACCACCGATGGTCTGAATGTCACCCCCACCAAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCACAACGCGCTCTTGGGAAACATGCAGACCCTAACCAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAGAGAAGAAGTCAGCTAAGGGGTTCTTTTCCCGTATTATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAACGCGAAGCTGGCGGAACATTTGGAACAGACTCTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTTTCGGAGGGGCTTTCATTGAGGCATGCGGGCGAATCAACATTATGCGGATCAAAAATAACCGATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCCCAAAGCAGTAGTAGCTAGGAGACACGCGGGGCGAGAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCCCAGCCTTCACAGCTCGGTCTCGTAGCTTGTCACGGTCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCATGCGCGCCACCTCAGACTCCACGAGCGCGAGCGCCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCCCCAGTTAATTACCCCAGTTATTCACTCAGTCATTTAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGNNNNNNNNNNNN # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 206062-206317 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814491.1 Rothia sp. HMSC072E10 Scaffold306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 206062 37 100.0 36 ..................................... CAAAGCAGTAGTAGCTAGGAGACACGCGGGGCGAGA 206135 37 100.0 37 ..................................... CAGCCTTCACAGCTCGGTCTCGTAGCTTGTCACGGTC 206209 37 97.3 35 ....................................A TGCGCGCCACCTCAGACTCCACGAGCGCGAGCGCC 206281 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 36 ATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCC # Left flank : NNNNNNNNTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAACGCGAAGCTGGCGGAACATTTGGAACAGACTCTTATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTGCTGAGAGTGTCGCTAAGGCGTTCGGCCTGTGGGTATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAGGTAACCGGGCGCGATAGCCAGCGGCTCGGCGGGTGCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAGCATGAACAACTAGGAAGGCACCTAATGACCGAGAAGACATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTTTCGGAGGGGCTTTCATTGAGGCATGCGGGCGAATCAACATTATGCGGATCAAAAATAACCG # Right flank : CCCAGTTAATTACCCCAGTTATTCACTCAGTCATTTAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTTTCGGAGGGGCTTTCATTGAGGCGCTTGTTTCTCTGGTTGGTGCGTGCAAAATCGCCGGTGATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTCTTATCGTCCGATGCGTCATGCGAAAGCTTGAGAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAGGTAACCGGGCGCGATAGCCAGCGGCTCGGCGGGTGCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTGAAAGCGGCGTAGGTCATGAGAGCGGCGGCTATGGCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 206553-206733 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814491.1 Rothia sp. HMSC072E10 Scaffold306, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 206553 36 100.0 35 .................................... TCTTATCGTCCGATGCGTCATGCGAAAGCTTGAGA 206624 36 100.0 38 .................................... AGGTAACCGGGCGCGATAGCCAGCGGCTCGGCGGGTGC 206698 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 37 ATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGC # Left flank : AAATAACCGATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCCCAAAGCAGTAGTAGCTAGGAGACACGCGGGGCGAGAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCCCAGCCTTCACAGCTCGGTCTCGTAGCTTGTCACGGTCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCATGCGCGCCACCTCAGACTCCACGAGCGCGAGCGCCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCCCCAGTTAATTACCCCAGTTATTCACTCAGTCATTTAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTTTCGGAGGGGCTTTCATTGAGGCGCTTGTTTCTCTGGTTGGTGCGTGCAAAATCGCCGGTG # Right flank : CTGAAAGCGGCGTAGGTCATGAGAGCGGCGGCTATGGCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCCAGACGAACAGGGGCACCTGCAGGGCAAGCCACTGGATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTCGTCGCGTGATTGGGCTGGTCGCCGCGAGTATGATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTATGAGCGGCAGATTATAGACAAACTGGGAGACAAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTTTAAGTACTCGAATGAGGCGTCCATCACTGACGGATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 206902-207213 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814491.1 Rothia sp. HMSC072E10 Scaffold306, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 206902 28 100.0 44 ............................ AGGCCAGACGAACAGGGGCACCTGCAGGGCAAGCCACTGGATTT 206974 28 100.0 42 ............................ AGGCTCGTCGCGTGATTGGGCTGGTCGCCGCGAGTATGATTT 207044 28 100.0 43 ............................ AGGCTATGAGCGGCAGATTATAGACAAACTGGGAGACAAATTT 207115 28 100.0 43 ............................ AGGCTTTAAGTACTCGAATGAGGCGTCCATCACTGACGGATTT 207186 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================ ================== 5 28 100.0 43 CCCTTCCTTTTCGGAGGGGCTTTCATTG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTTTCGGAGGGGCTTTCATTGAGGCGCTTGTTTCTCTGGTTGGTGCGTGCAAAATCGCCGGTGATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTCTTATCGTCCGATGCGTCATGCGAAAGCTTGAGAATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCAGGTAACCGGGCGCGATAGCCAGCGGCTCGGCGGGTGCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCTGAAAGCGGCGTAGGTCATGAGAGCGGCGGCTATGGCATTTCCCTTCCTTTTCGGAGGGGCTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCGAACTAGAATTCACTATCTGCGTTGGCGCTGGAAATTTCCCTTCCTTTTCGGAAGGGCTTTCATTGAGGTCTTTCTACTGCACTCTACTAGCTGGGTCTTTCTTCGCTTTCTAACGGAGACTTTCATTGAGGCGTCACACCTCTTGCATCCAATAAGTCAGGCTTATAATATTTCCCTACCTTTTTTGTAGGGACTTTTATTGAGGCCATGCGAAGGGCTCATCCTTGCCCACGGTCCCCGGTATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGGGTGACCGACCGAACCTTCAAGATCGGCACCGGCTCGGATTTCCCTTCTTTTTCGGAAGGGCTTTCATTGAGGGGCGCTGACCGTGCAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCTTTTCGGAGGGGCTTTCATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //