Array 1 103082-101926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEJLP010000003.1 Enterococcus faecalis strain VRE33732 VRE33732_c0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 103081 36 100.0 30 .................................... TTGAAACACATAATCATTAACCGCTTTTTG 103015 36 97.2 30 ......A............................. AAAATTCTTCTAACGTTTGCGCTGAAATAT 102949 36 100.0 29 .................................... TGTCTCTTTGATGGCTTCCTTTTTAACCA 102884 36 100.0 30 .................................... AAAAACCAGATTTAGAAACTATTAAAGATA 102818 36 100.0 30 .................................... GCTTTTTCTCCTGCAAACTCTTCGATCTGA 102752 36 100.0 30 .................................... CAACTAGTTCAGTAATTTCGCCTTCACTTT 102686 36 100.0 30 .................................... AAATCACGAGAAAGAACGGCTTCTTAGAGA 102620 36 100.0 29 .................................... TTTTTCTCTTTTTCGGTTGTTAGCTCTGG 102555 36 100.0 30 .................................... AAACGATACCTTATACCATTGAATATAATG 102489 36 100.0 30 .................................... CGTTCCATTGCTTTAAACTAGTATCGGAAG 102423 36 100.0 30 .................................... AGTTCGCTTATTCCCATCATGGCACAGACC 102357 36 100.0 30 .................................... AAAACAAGTAAAAGACGTGGGTAATCAGTT 102291 36 100.0 30 .................................... TGGAACATGAGAGTGGTTTAAACCCTGCTA 102225 36 100.0 30 .................................... GCACCTAGAACGACGTCAATCGGTTGGTTG 102159 36 100.0 30 .................................... GCAAAATGCCCGCTGCTATCTATTCAACGA 102093 36 100.0 30 .................................... TAAAGATGGCAATCCTAAGCCAAGGCTTGA 102027 36 100.0 30 .................................... ACGTGTCGTCGTAAGTTGTTGCAGTCCATG 101961 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : AATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 9699-9464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEJLP010000008.1 Enterococcus faecalis strain VRE33732 VRE33732_c0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 9698 37 97.3 29 ....................................T ATAACGTAAATCACAGTCTTTTGTAAGTC 9632 37 97.3 29 ....................................G AAACCTTTTTTTGCGTTTGATATTTCTGT 9566 37 97.3 29 ....................................A TTGAATCTGGCCAGCTGGCGCTAATTGTT 9500 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 98.0 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACC # Left flank : TTCTCGCCAATGTTACAATATCAAACATATTATTTCCTCCCTGATTTGCCTCCACACAAAGAAACAAGCTTACCTGAATTGTTCATTTCCATTAGCGATGACTCCTTTTATCTACGAAACTAAAAGAAAATTCAAGTGAACTTTTCCAAAAAGTGTGAAAATGCATGTAATATAGAATAATTCCAATCTAAGTATACAACTTTCTGAGGCAGAAACCAAACAATACAGAAGCATTTCTCACAATTTTTTTAGGTGCTACCAAGATTTCTTCCCGTTCTTCTATCAATAAAAAAAGCCCTTCCTAAAAAAAGGAAGAACTAATCTCAATCTATCAACATTTTGACTTATCACTTGATTAGTTTTCGAAAATTGAAGCAGCTCGTCTTTGATGATAAAAATTCTAATCTTGTGATGAAAATTACGGATTGCTTGAGGTGATAGTTTGTTTTTTAACAACATGGCTCTAAAACAGGGGAGAAAAAGCCAAATCAAAAAAGTTT # Right flank : TCGGAGAATTATTTTTTCTCCATGATTCCGTAGTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAAGGTCTAATTTTTTTCTTCACGTTTATTATACCAAACTTTTTCCTTCTTGGCGGAAAAACCCACCATTTTTCAATGGTGGGTTTTCTTTATTTAGTAGCTGTAACAGCGAGCCAGATTTCACTATACTTAACTTCTGCTGGTCCTTGATATTGCGTAAACGAAATTTCTGGTGCTGCAACGACTTGGTAACCAGATGAAGGCAACCATTCAGAGAATATCCTTGCCCAGGTTTCTTGTAAAGTTTGTGGGAAAGGACCTTCATTTGGAAAAACCGCCCATGTATGAGCAGGTACGCTTAGTTGCTCCAAATCTTCATAGGTATTTTCTTGCAAAGTGGCAAAGCCAATCATGTGTGTCATTTCTCCACCCTCTGTTGTTCGTCCCTCTTGAAAGTCAAAAGAAGCATTTACTACTTGATGAGGATATACAT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //